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L1000CDS2: LINCS L1000 characteristic direction signatures search engine.
Duan Q, Reid SP, Clark NR, Wang Z, Fernandez NF, Rouillard AD, Readhead B, Tritsch SR, Hodos R, Hafner M, Niepel M, Sorger PK, Dudley JT, Bavari S, Panchal RG, Ma'ayan A. Duan Q, et al. Among authors: hodos r. NPJ Syst Biol Appl. 2016;2:16015-. doi: 10.1038/npjsba.2016.15. Epub 2016 Aug 4. NPJ Syst Biol Appl. 2016. PMID: 28413689 Free PMC article.
In silico methods for drug repurposing and pharmacology.
Hodos RA, Kidd BA, Shameer K, Readhead BP, Dudley JT. Hodos RA, et al. Wiley Interdiscip Rev Syst Biol Med. 2016 May;8(3):186-210. doi: 10.1002/wsbm.1337. Epub 2016 Apr 15. Wiley Interdiscip Rev Syst Biol Med. 2016. PMID: 27080087 Free PMC article. Review.
Systematic analyses of drugs and disease indications in RepurposeDB reveal pharmacological, biological and epidemiological factors influencing drug repositioning.
Shameer K, Glicksberg BS, Hodos R, Johnson KW, Badgeley MA, Readhead B, Tomlinson MS, O'Connor T, Miotto R, Kidd BA, Chen R, Ma'ayan A, Dudley JT. Shameer K, et al. Among authors: hodos r. Brief Bioinform. 2018 Jul 20;19(4):656-678. doi: 10.1093/bib/bbw136. Brief Bioinform. 2018. PMID: 28200013 Free PMC article.