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L1000CDS2: LINCS L1000 characteristic direction signatures search engine.
NPJ Syst Biol Appl. 2016;2:16015-. doi: 10.1038/npjsba.2016.15. Epub 2016 Aug 4.
NPJ Syst Biol Appl. 2016.
PMID: 28413689
Free PMC article.
Cell-specific prediction and application of drug-induced gene expression profiles.
Hodos R, Zhang P, Lee HC, Duan Q, Wang Z, Clark NR, Ma'ayan A, Wang F, Kidd B, Hu J, Sontag D, Dudley J.
Hodos R, et al.
Pac Symp Biocomput. 2018;23:32-43.
Pac Symp Biocomput. 2018.
PMID: 29218867
Free PMC article.
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In silico methods for drug repurposing and pharmacology.
Hodos RA, Kidd BA, Shameer K, Readhead BP, Dudley JT.
Hodos RA, et al.
Wiley Interdiscip Rev Syst Biol Med. 2016 May;8(3):186-210. doi: 10.1002/wsbm.1337. Epub 2016 Apr 15.
Wiley Interdiscip Rev Syst Biol Med. 2016.
PMID: 27080087
Free PMC article.
Review.
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Systematic analyses of drugs and disease indications in RepurposeDB reveal pharmacological, biological and epidemiological factors influencing drug repositioning.
Shameer K, Glicksberg BS, Hodos R, Johnson KW, Badgeley MA, Readhead B, Tomlinson MS, O'Connor T, Miotto R, Kidd BA, Chen R, Ma'ayan A, Dudley JT.
Shameer K, et al. Among authors: hodos r.
Brief Bioinform. 2018 Jul 20;19(4):656-678. doi: 10.1093/bib/bbw136.
Brief Bioinform. 2018.
PMID: 28200013
Free PMC article.
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Causal inference on electronic health records to assess blood pressure treatment targets: an application of the parametric g formula.
Johnson KW, Glicksberg BS, Hodos RA, Shameer K, Dudley JT.
Johnson KW, et al. Among authors: hodos ra.
Pac Symp Biocomput. 2018;23:180-191.
Pac Symp Biocomput. 2018.
PMID: 29218880
Free PMC article.
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Integrative genomic meta-analysis reveals novel molecular insights into cystic fibrosis and ΔF508-CFTR rescue.
Hodos RA, Strub MD, Ramachandran S, Li L, McCray PB Jr, Dudley JT.
Hodos RA, et al.
Sci Rep. 2020 Nov 25;10(1):20553. doi: 10.1038/s41598-020-76347-0.
Sci Rep. 2020.
PMID: 33239626
Free PMC article.
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Integrative chemogenomic analysis identifies small molecules that partially rescue ΔF508-CFTR for cystic fibrosis.
Hodos RA, Strub MD, Ramachandran S, Meleshkevitch EA, Boudko DY, Bridges RJ, Dudley JT, McCray PB Jr.
Hodos RA, et al.
CPT Pharmacometrics Syst Pharmacol. 2021 May;10(5):500-510. doi: 10.1002/psp4.12626. Epub 2021 May 2.
CPT Pharmacometrics Syst Pharmacol. 2021.
PMID: 33934548
Free PMC article.
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