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TAREAN: a computational tool for identification and characterization of satellite DNA from unassembled short reads.
Nucleic Acids Res. 2017 Jul 7;45(12):e111. doi: 10.1093/nar/gkx257.
Nucleic Acids Res. 2017.
PMID: 28402514
Free PMC article.
Satellite DNA in Vicia faba is characterized by remarkable diversity in its sequence composition, association with centromeres, and replication timing.
Ávila Robledillo L, Koblížková A, Novák P, Böttinger K, Vrbová I, Neumann P, Schubert I, Macas J.
Ávila Robledillo L, et al.
Sci Rep. 2018 Apr 11;8(1):5838. doi: 10.1038/s41598-018-24196-3.
Sci Rep. 2018.
PMID: 29643436
Free PMC article.
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Characterization of repeat arrays in ultra-long nanopore reads reveals frequent origin of satellite DNA from retrotransposon-derived tandem repeats.
Vondrak T, Ávila Robledillo L, Novák P, Koblížková A, Neumann P, Macas J.
Vondrak T, et al. Among authors: avila robledillo l.
Plant J. 2020 Jan;101(2):484-500. doi: 10.1111/tpj.14546. Epub 2019 Nov 3.
Plant J. 2020.
PMID: 31559657
Free PMC article.
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Extraordinary Sequence Diversity and Promiscuity of Centromeric Satellites in the Legume Tribe Fabeae.
Ávila Robledillo L, Neumann P, Koblížková A, Novák P, Vrbová I, Macas J.
Ávila Robledillo L, et al.
Mol Biol Evol. 2020 Aug 1;37(8):2341-2356. doi: 10.1093/molbev/msaa090.
Mol Biol Evol. 2020.
PMID: 32259249
Free PMC article.
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Assembly of the 81.6 Mb centromere of pea chromosome 6 elucidates the structure and evolution of metapolycentric chromosomes.
Macas J, Ávila Robledillo L, Kreplak J, Novák P, Koblížková A, Vrbová I, Burstin J, Neumann P.
Macas J, et al. Among authors: avila robledillo l.
PLoS Genet. 2023 Feb 3;19(2):e1010633. doi: 10.1371/journal.pgen.1010633. eCollection 2023 Feb.
PLoS Genet. 2023.
PMID: 36735726
Free PMC article.
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