Floden EW - Search Results

1

Nextflow enables reproducible computational workflows.

Di Tommaso P, Chatzou M, Floden EW, Barja PP, Palumbo E, Notredame C. Di Tommaso P, et al. Among authors: floden ew. Nat Biotechnol. 2017 Apr 11;35(4):316-319. doi: 10.1038/nbt.3820. Nat Biotechnol. 2017. PMID: 28398311 No abstract available.

2

Large multiple sequence alignments with a root-to-leaf regressive method.

Garriga E, Di Tommaso P, Magis C, Erb I, Mansouri L, Baltzis A, Laayouni H, Kondrashov F, Floden E, Notredame C. Garriga E, et al. Nat Biotechnol. 2019 Dec;37(12):1466-1470. doi: 10.1038/s41587-019-0333-6. Epub 2019 Dec 2. Nat Biotechnol. 2019. PMID: 31792410 Free PMC article.

3

[Nextflow, an efficient tool to improve computation numerical stability in genomic analysis].

Tommaso PD, Floden EW, Magis C, Palumbo E, Notredame C. Tommaso PD, et al. Among authors: floden ew. Biol Aujourdhui. 2017;211(3):233-237. doi: 10.1051/jbio/2017029. Epub 2018 Feb 7. Biol Aujourdhui. 2017. PMID: 29412134 French.

4

Multiple Sequence Alignment Computation Using the T-Coffee Regressive Algorithm Implementation.

Garriga E, Di Tommaso P, Magis C, Erb I, Mansouri L, Baltzis A, Floden E, Notredame C. Garriga E, et al. Methods Mol Biol. 2021;2231:89-97. doi: 10.1007/978-1-0716-1036-7_6. Methods Mol Biol. 2021. PMID: 33289888

5

Generalized Bootstrap Supports for Phylogenetic Analyses of Protein Sequences Incorporating Alignment Uncertainty.

Chatzou M, Floden EW, Di Tommaso P, Gascuel O, Notredame C. Chatzou M, et al. Among authors: floden ew. Syst Biol. 2018 Nov 1;67(6):997-1009. doi: 10.1093/sysbio/syx096. Syst Biol. 2018. PMID: 30295908

6

PSI/TM-Coffee: a web server for fast and accurate multiple sequence alignments of regular and transmembrane proteins using homology extension on reduced databases.

Floden EW, Tommaso PD, Chatzou M, Magis C, Notredame C, Chang JM. Floden EW, et al. Nucleic Acids Res. 2016 Jul 8;44(W1):W339-43. doi: 10.1093/nar/gkw300. Epub 2016 Apr 22. Nucleic Acids Res. 2016. PMID: 27106060 Free PMC article.

7

Incorporating alignment uncertainty into Felsenstein's phylogenetic bootstrap to improve its reliability.

Chang JM, Floden EW, Herrero J, Gascuel O, Di Tommaso P, Notredame C. Chang JM, et al. Among authors: floden ew. Bioinformatics. 2021 Jul 12;37(11):1506-1514. doi: 10.1093/bioinformatics/btz082. Bioinformatics. 2021. PMID: 30726875 Free PMC article.

8

HCVIVdb: The hepatitis-C IRES variation database.

Floden EW, Khawaja A, Vopálenský V, Pospíšek M. Floden EW, et al. BMC Microbiol. 2016 Aug 15;16(1):187. doi: 10.1186/s12866-016-0804-6. BMC Microbiol. 2016. PMID: 27527702 Free PMC article.

9

Rfam 12.0: updates to the RNA families database.

Nawrocki EP, Burge SW, Bateman A, Daub J, Eberhardt RY, Eddy SR, Floden EW, Gardner PP, Jones TA, Tate J, Finn RD. Nawrocki EP, et al. Among authors: floden ew. Nucleic Acids Res. 2015 Jan;43(Database issue):D130-7. doi: 10.1093/nar/gku1063. Epub 2014 Nov 11. Nucleic Acids Res. 2015. PMID: 25392425 Free PMC article.

10

Quantification of in vitro and in vivo angiogenesis stimulated by ovine forestomach matrix biomaterial.

Irvine SM, Cayzer J, Todd EM, Lun S, Floden EW, Negron L, Fisher JN, Dempsey SG, Alexander A, Hill MC, O'Rouke A, Gunningham SP, Knight C, Davis PF, Ward BR, May BC. Irvine SM, et al. Among authors: floden ew. Biomaterials. 2011 Sep;32(27):6351-61. doi: 10.1016/j.biomaterials.2011.05.040. Epub 2011 Jun 12. Biomaterials. 2011. PMID: 21665268

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