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Nextflow enables reproducible computational workflows.
Nat Biotechnol. 2017 Apr 11;35(4):316-319. doi: 10.1038/nbt.3820.
Nat Biotechnol. 2017.
PMID: 28398311
No abstract available.
Generalized Bootstrap Supports for Phylogenetic Analyses of Protein Sequences Incorporating Alignment Uncertainty.
Chatzou M, Floden EW, Di Tommaso P, Gascuel O, Notredame C.
Chatzou M, et al.
Syst Biol. 2018 Nov 1;67(6):997-1009. doi: 10.1093/sysbio/syx096.
Syst Biol. 2018.
PMID: 30295908
Item in Clipboard
SARA-Coffee web server, a tool for the computation of RNA sequence and structure multiple alignments.
Di Tommaso P, Bussotti G, Kemena C, Capriotti E, Chatzou M, Prieto P, Notredame C.
Di Tommaso P, et al. Among authors: chatzou m.
Nucleic Acids Res. 2014 Jul;42(Web Server issue):W356-60. doi: 10.1093/nar/gku459. Epub 2014 Jun 27.
Nucleic Acids Res. 2014.
PMID: 24972831
Free PMC article.
Item in Clipboard
The impact of Docker containers on the performance of genomic pipelines.
Di Tommaso P, Palumbo E, Chatzou M, Prieto P, Heuer ML, Notredame C.
Di Tommaso P, et al. Among authors: chatzou m.
PeerJ. 2015 Sep 24;3:e1273. doi: 10.7717/peerj.1273. eCollection 2015.
PeerJ. 2015.
PMID: 26421241
Free PMC article.
Item in Clipboard
PSI/TM-Coffee: a web server for fast and accurate multiple sequence alignments of regular and transmembrane proteins using homology extension on reduced databases.
Floden EW, Tommaso PD, Chatzou M, Magis C, Notredame C, Chang JM.
Floden EW, et al. Among authors: chatzou m.
Nucleic Acids Res. 2016 Jul 8;44(W1):W339-43. doi: 10.1093/nar/gkw300. Epub 2016 Apr 22.
Nucleic Acids Res. 2016.
PMID: 27106060
Free PMC article.
Item in Clipboard
Multiple sequence alignment modeling: methods and applications.
Chatzou M, Magis C, Chang JM, Kemena C, Bussotti G, Erb I, Notredame C.
Chatzou M, et al.
Brief Bioinform. 2016 Nov;17(6):1009-1023. doi: 10.1093/bib/bbv099. Epub 2015 Nov 27.
Brief Bioinform. 2016.
PMID: 26615024
Review.
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