Fu Y - Search Results

1

Lessons from the CAGI-4 Hopkins clinical panel challenge.

Chandonia JM, Adhikari A, Carraro M, Chhibber A, Cutting GR, Fu Y, Gasparini A, Jones DT, Kramer A, Kundu K, Lam HYK, Leonardi E, Moult J, Pal LR, Searls DB, Shah S, Sunyaev S, Tosatto SCE, Yin Y, Buckley BA. Chandonia JM, et al. Among authors: fu y. Hum Mutat. 2017 Sep;38(9):1155-1168. doi: 10.1002/humu.23225. Epub 2017 Jun 12. Hum Mutat. 2017. PMID: 28397312 Free PMC article.

2

ecTMB: a robust method to estimate and classify tumor mutational burden.

Yao L, Fu Y, Mohiyuddin M, Lam HYK. Yao L, et al. Among authors: fu y. Sci Rep. 2020 Mar 18;10(1):4983. doi: 10.1038/s41598-020-61575-1. Sci Rep. 2020. PMID: 32188929 Free PMC article.

3

FunSeq2: a framework for prioritizing noncoding regulatory variants in cancer.

Fu Y, Liu Z, Lou S, Bedford J, Mu XJ, Yip KY, Khurana E, Gerstein M. Fu Y, et al. Genome Biol. 2014;15(10):480. doi: 10.1186/s13059-014-0480-5. Genome Biol. 2014. PMID: 25273974 Free PMC article.

4

Using ALoFT to determine the impact of putative loss-of-function variants in protein-coding genes.

Balasubramanian S, Fu Y, Pawashe M, McGillivray P, Jin M, Liu J, Karczewski KJ, MacArthur DG, Gerstein M. Balasubramanian S, et al. Among authors: fu y. Nat Commun. 2017 Aug 29;8(1):382. doi: 10.1038/s41467-017-00443-5. Nat Commun. 2017. PMID: 28851873 Free PMC article.

5

Interpretation of genomic variants using a unified biological network approach.

Khurana E, Fu Y, Chen J, Gerstein M. Khurana E, et al. Among authors: fu y. PLoS Comput Biol. 2013;9(3):e1002886. doi: 10.1371/journal.pcbi.1002886. Epub 2013 Mar 7. PLoS Comput Biol. 2013. PMID: 23505346 Free PMC article.

6

Role of non-coding sequence variants in cancer.

Khurana E, Fu Y, Chakravarty D, Demichelis F, Rubin MA, Gerstein M. Khurana E, et al. Among authors: fu y. Nat Rev Genet. 2016 Feb;17(2):93-108. doi: 10.1038/nrg.2015.17. Epub 2016 Jan 19. Nat Rev Genet. 2016. PMID: 26781813 Review.

7

Reconstructing genome-wide regulatory network of E. coli using transcriptome data and predicted transcription factor activities.

Fu Y, Jarboe LR, Dickerson JA. Fu Y, et al. BMC Bioinformatics. 2011 Jun 13;12:233. doi: 10.1186/1471-2105-12-233. BMC Bioinformatics. 2011. PMID: 21668997 Free PMC article.

8

Using FunSeq2 for Coding and Non-Coding Variant Annotation and Prioritization.

Dhingra P, Fu Y, Gerstein M, Khurana E. Dhingra P, et al. Among authors: fu y. Curr Protoc Bioinformatics. 2017 May 2;57:15.11.1-15.11.17. doi: 10.1002/cpbi.23. Curr Protoc Bioinformatics. 2017. PMID: 28463398

9

Analyzing the Effects of Pretreatment Diversity on HCV Drug Treatment Responsiveness Using Bayesian Partition methods.

Fu Y, Chen G, Guo X, Zhang J, Pan Y. Fu Y, et al. J Bioinform Proteom Rev. 2015;1(1):1-6. Epub 2015 May 12. J Bioinform Proteom Rev. 2015. PMID: 26457332 Free PMC article.

10

Integrative annotation of variants from 1092 humans: application to cancer genomics.

Khurana E, Fu Y, Colonna V, Mu XJ, Kang HM, Lappalainen T, Sboner A, Lochovsky L, Chen J, Harmanci A, Das J, Abyzov A, Balasubramanian S, Beal K, Chakravarty D, Challis D, Chen Y, Clarke D, Clarke L, Cunningham F, Evani US, Flicek P, Fragoza R, Garrison E, Gibbs R, Gümüş ZH, Herrero J, Kitabayashi N, Kong Y, Lage K, Liluashvili V, Lipkin SM, MacArthur DG, Marth G, Muzny D, Pers TH, Ritchie GRS, Rosenfeld JA, Sisu C, Wei X, Wilson M, Xue Y, Yu F; 1000 Genomes Project Consortium; Dermitzakis ET, Yu H, Rubin MA, Tyler-Smith C, Gerstein M. Khurana E, et al. Among authors: fu y. Science. 2013 Oct 4;342(6154):1235587. doi: 10.1126/science.1235587. Science. 2013. PMID: 24092746 Free PMC article.

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