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2,611 results

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An algorithm for automated closure during assembly.
Koren S, Miller JR, Walenz BP, Sutton G. Koren S, et al. Among authors: miller jr. BMC Bioinformatics. 2010 Sep 10;11:457. doi: 10.1186/1471-2105-11-457. BMC Bioinformatics. 2010. PMID: 20831800 Free PMC article.
Gene and alternative splicing annotation with AIR.
Florea L, Di Francesco V, Miller J, Turner R, Yao A, Harris M, Walenz B, Mobarry C, Merkulov GV, Charlab R, Dew I, Deng Z, Istrail S, Li P, Sutton G. Florea L, et al. Genome Res. 2005 Jan;15(1):54-66. doi: 10.1101/gr.2889405. Genome Res. 2005. PMID: 15632090 Free PMC article.
Aggressive assembly of pyrosequencing reads with mates.
Miller JR, Delcher AL, Koren S, Venter E, Walenz BP, Brownley A, Johnson J, Li K, Mobarry C, Sutton G. Miller JR, et al. Bioinformatics. 2008 Dec 15;24(24):2818-24. doi: 10.1093/bioinformatics/btn548. Epub 2008 Oct 24. Bioinformatics. 2008. PMID: 18952627 Free PMC article.
An improved genome assembly uncovers prolific tandem repeats in Atlantic cod.
Tørresen OK, Star B, Jentoft S, Reinar WB, Grove H, Miller JR, Walenz BP, Knight J, Ekholm JM, Peluso P, Edvardsen RB, Tooming-Klunderud A, Skage M, Lien S, Jakobsen KS, Nederbragt AJ. Tørresen OK, et al. Among authors: miller jr. BMC Genomics. 2017 Jan 18;18(1):95. doi: 10.1186/s12864-016-3448-x. BMC Genomics. 2017. PMID: 28100185 Free PMC article.
Analysis of the Aedes albopictus C6/36 genome provides insight into cell line utility for viral propagation.
Miller JR, Koren S, Dilley KA, Puri V, Brown DM, Harkins DM, Thibaud-Nissen F, Rosen B, Chen XG, Tu Z, Sharakhov IV, Sharakhova MV, Sebra R, Stockwell TB, Bergman NH, Sutton GG, Phillippy AM, Piermarini PM, Shabman RS. Miller JR, et al. Gigascience. 2018 Mar 1;7(3):1-13. doi: 10.1093/gigascience/gix135. Gigascience. 2018. PMID: 29329394 Free PMC article.
Consensus generation and variant detection by Celera Assembler.
Denisov G, Walenz B, Halpern AL, Miller J, Axelrod N, Levy S, Sutton G. Denisov G, et al. Bioinformatics. 2008 Apr 15;24(8):1035-40. doi: 10.1093/bioinformatics/btn074. Epub 2008 Mar 4. Bioinformatics. 2008. PMID: 18321888
Hybrid assembly with long and short reads improves discovery of gene family expansions.
Miller JR, Zhou P, Mudge J, Gurtowski J, Lee H, Ramaraj T, Walenz BP, Liu J, Stupar RM, Denny R, Song L, Singh N, Maron LG, McCouch SR, McCombie WR, Schatz MC, Tiffin P, Young ND, Silverstein KAT. Miller JR, et al. BMC Genomics. 2017 Jul 19;18(1):541. doi: 10.1186/s12864-017-3927-8. BMC Genomics. 2017. PMID: 28724409 Free PMC article.
A draft genome sequence for the Ixodes scapularis cell line, ISE6.
Miller JR, Koren S, Dilley KA, Harkins DM, Stockwell TB, Shabman RS, Sutton GG. Miller JR, et al. F1000Res. 2018 Mar 8;7:297. doi: 10.12688/f1000research.13635.1. eCollection 2018. F1000Res. 2018. PMID: 29707202 Free PMC article.
2,611 results