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Succinct colored de Bruijn graphs.
Muggli MD, Bowe A, Noyes NR, Morley PS, Belk KE, Raymond R, Gagie T, Puglisi SJ, Boucher C. Muggli MD, et al. Among authors: puglisi sj. Bioinformatics. 2017 Oct 15;33(20):3181-3187. doi: 10.1093/bioinformatics/btx067. Bioinformatics. 2017. PMID: 28200001 Free PMC article.
Hybrid indexes for repetitive datasets.
Ferrada H, Gagie T, Hirvola T, Puglisi SJ. Ferrada H, et al. Among authors: puglisi sj. Philos Trans A Math Phys Eng Sci. 2014 Apr 21;372(2016):20130137. doi: 10.1098/rsta.2013.0137. Print 2014 May 28. Philos Trans A Math Phys Eng Sci. 2014. PMID: 24751871
Searching and Indexing Genomic Databases via Kernelization.
Gagie T, Puglisi SJ. Gagie T, et al. Among authors: puglisi sj. Front Bioeng Biotechnol. 2015 Feb 9;3:12. doi: 10.3389/fbioe.2015.00012. eCollection 2015. Front Bioeng Biotechnol. 2015. PMID: 25710001 Free PMC article. Review.
emMAW: computing minimal absent words in external memory.
Héliou A, Pissis SP, Puglisi SJ. Héliou A, et al. Among authors: puglisi sj. Bioinformatics. 2017 Sep 1;33(17):2746-2749. doi: 10.1093/bioinformatics/btx209. Bioinformatics. 2017. PMID: 28407038
Document retrieval on repetitive string collections.
Gagie T, Hartikainen A, Karhu K, Kärkkäinen J, Navarro G, Puglisi SJ, Sirén J. Gagie T, et al. Among authors: puglisi sj. Inf Retr Boston. 2017;20(3):253-291. doi: 10.1007/s10791-017-9297-7. Epub 2017 Apr 1. Inf Retr Boston. 2017. PMID: 28596702 Free PMC article.
Relative Suffix Trees.
Farruggia A, Gagie T, Navarro G, Puglisi SJ, Sirén J. Farruggia A, et al. Among authors: puglisi sj. Comput J. 2018 May;61(5):773-788. doi: 10.1093/comjnl/bxx108. Epub 2017 Nov 21. Comput J. 2018. PMID: 29795706 Free PMC article.
Fast and accurate correction of optical mapping data via spaced seeds.
Salmela L, Mukherjee K, Puglisi SJ, Muggli MD, Boucher C. Salmela L, et al. Among authors: puglisi sj. Bioinformatics. 2020 May 1;36(9):2974. doi: 10.1093/bioinformatics/btaa101. Bioinformatics. 2020. PMID: 32187358 Free PMC article. No abstract available.
17 results