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Succinct colored de Bruijn graphs.
Muggli MD, Bowe A, Noyes NR, Morley PS, Belk KE, Raymond R, Gagie T, Puglisi SJ, Boucher C. Muggli MD, et al. Among authors: boucher c. Bioinformatics. 2017 Oct 15;33(20):3181-3187. doi: 10.1093/bioinformatics/btx067. Bioinformatics. 2017. PMID: 28200001 Free PMC article.
Use of Metagenomic Shotgun Sequencing Technology To Detect Foodborne Pathogens within the Microbiome of the Beef Production Chain.
Yang X, Noyes NR, Doster E, Martin JN, Linke LM, Magnuson RJ, Yang H, Geornaras I, Woerner DR, Jones KL, Ruiz J, Boucher C, Morley PS, Belk KE. Yang X, et al. Among authors: boucher c. Appl Environ Microbiol. 2016 Apr 4;82(8):2433-2443. doi: 10.1128/AEM.00078-16. Print 2016 Apr. Appl Environ Microbiol. 2016. PMID: 26873315 Free PMC article.
Error correcting optical mapping data.
Mukherjee K, Washimkar D, Muggli MD, Salmela L, Boucher C. Mukherjee K, et al. Among authors: boucher c. Gigascience. 2018 Jun 1;7(6):giy061. doi: 10.1093/gigascience/giy061. Gigascience. 2018. PMID: 29846578 Free PMC article.
Practical dynamic de Bruijn graphs.
Crawford VG, Kuhnle A, Boucher C, Chikhi R, Gagie T. Crawford VG, et al. Among authors: boucher c. Bioinformatics. 2018 Dec 15;34(24):4189-4195. doi: 10.1093/bioinformatics/bty500. Bioinformatics. 2018. PMID: 29939217
Investigating Effects of Tulathromycin Metaphylaxis on the Fecal Resistome and Microbiome of Commercial Feedlot Cattle Early in the Feeding Period.
Doster E, Rovira P, Noyes NR, Burgess BA, Yang X, Weinroth MD, Lakin SM, Dean CJ, Linke L, Magnuson R, Jones KI, Boucher C, Ruiz J, Belk KE, Morley PS. Doster E, et al. Among authors: boucher c. Front Microbiol. 2018 Jul 30;9:1715. doi: 10.3389/fmicb.2018.01715. eCollection 2018. Front Microbiol. 2018. PMID: 30105011 Free PMC article.
Aligning optical maps to de Bruijn graphs.
Mukherjee K, Alipanahi B, Kahveci T, Salmela L, Boucher C. Mukherjee K, et al. Among authors: boucher c. Bioinformatics. 2019 Sep 15;35(18):3250-3256. doi: 10.1093/bioinformatics/btz069. Bioinformatics. 2019. PMID: 30698651
Prefix-free parsing for building big BWTs.
Boucher C, Gagie T, Kuhnle A, Langmead B, Manzini G, Mun T. Boucher C, et al. Algorithms Mol Biol. 2019 May 24;14:13. doi: 10.1186/s13015-019-0148-5. eCollection 2019. Algorithms Mol Biol. 2019. PMID: 31149025 Free PMC article.
840 results