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Diversity and regulatory impact of copy number variation in the primate Macaca fascicularis.
BMC Genomics. 2017 Feb 10;18(1):144. doi: 10.1186/s12864-017-3531-y.
BMC Genomics. 2017.
PMID: 28183275
Free PMC article.
Population Variation and Genetic Control of Modular Chromatin Architecture in Humans.
Waszak SM, Delaneau O, Gschwind AR, Kilpinen H, Raghav SK, Witwicki RM, Orioli A, Wiederkehr M, Panousis NI, Yurovsky A, Romano-Palumbo L, Planchon A, Bielser D, Padioleau I, Udin G, Thurnheer S, Hacker D, Hernandez N, Reymond A, Deplancke B, Dermitzakis ET.
Waszak SM, et al. Among authors: gschwind ar.
Cell. 2015 Aug 27;162(5):1039-50. doi: 10.1016/j.cell.2015.08.001. Epub 2015 Aug 20.
Cell. 2015.
PMID: 26300124
Free article.
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Coordinated effects of sequence variation on DNA binding, chromatin structure, and transcription.
Kilpinen H, Waszak SM, Gschwind AR, Raghav SK, Witwicki RM, Orioli A, Migliavacca E, Wiederkehr M, Gutierrez-Arcelus M, Panousis NI, Yurovsky A, Lappalainen T, Romano-Palumbo L, Planchon A, Bielser D, Bryois J, Padioleau I, Udin G, Thurnheer S, Hacker D, Core LJ, Lis JT, Hernandez N, Reymond A, Deplancke B, Dermitzakis ET.
Kilpinen H, et al. Among authors: gschwind ar.
Science. 2013 Nov 8;342(6159):744-7. doi: 10.1126/science.1242463. Epub 2013 Oct 17.
Science. 2013.
PMID: 24136355
Free PMC article.
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Identification and removal of low-complexity sites in allele-specific analysis of ChIP-seq data.
Waszak SM, Kilpinen H, Gschwind AR, Orioli A, Raghav SK, Witwicki RM, Migliavacca E, Yurovsky A, Lappalainen T, Hernandez N, Reymond A, Dermitzakis ET, Deplancke B.
Waszak SM, et al. Among authors: gschwind ar.
Bioinformatics. 2014 Jan 15;30(2):165-71. doi: 10.1093/bioinformatics/btt667. Epub 2013 Nov 18.
Bioinformatics. 2014.
PMID: 24255646
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An encyclopedia of enhancer-gene regulatory interactions in the human genome.
Gschwind AR, Mualim KS, Karbalayghareh A, Sheth MU, Dey KK, Jagoda E, Nurtdinov RN, Xi W, Tan AS, Jones H, Ma XR, Yao D, Nasser J, Avsec Ž, James BT, Shamim MS, Durand NC, Rao SSP, Mahajan R, Doughty BR, Andreeva K, Ulirsch JC, Fan K, Perez EM, Nguyen TC, Kelley DR, Finucane HK, Moore JE, Weng Z, Kellis M, Bassik MC, Price AL, Beer MA, Guigó R, Stamatoyannopoulos JA, Lieberman Aiden E, Greenleaf WJ, Leslie CS, Steinmetz LM, Kundaje A, Engreitz JM.
Gschwind AR, et al.
bioRxiv [Preprint]. 2023 Nov 13:2023.11.09.563812. doi: 10.1101/2023.11.09.563812.
bioRxiv. 2023.
PMID: 38014075
Free PMC article.
Preprint.
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Single-cell analyses reveal SARS-CoV-2 interference with intrinsic immune response in the human gut.
Triana S, Metz-Zumaran C, Ramirez C, Kee C, Doldan P, Shahraz M, Schraivogel D, Gschwind AR, Sharma AK, Steinmetz LM, Herrmann C, Alexandrov T, Boulant S, Stanifer ML.
Triana S, et al. Among authors: gschwind ar.
Mol Syst Biol. 2021 Apr;17(4):e10232. doi: 10.15252/msb.202110232.
Mol Syst Biol. 2021.
PMID: 33904651
Free PMC article.
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Combined transient ablation and single-cell RNA-sequencing reveals the development of medullary thymic epithelial cells.
Wells KL, Miller CN, Gschwind AR, Wei W, Phipps JD, Anderson MS, Steinmetz LM.
Wells KL, et al. Among authors: gschwind ar.
Elife. 2020 Nov 23;9:e60188. doi: 10.7554/eLife.60188.
Elife. 2020.
PMID: 33226342
Free PMC article.
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Targeted Perturb-seq enables genome-scale genetic screens in single cells.
Schraivogel D, Gschwind AR, Milbank JH, Leonce DR, Jakob P, Mathur L, Korbel JO, Merten CA, Velten L, Steinmetz LM.
Schraivogel D, et al. Among authors: gschwind ar.
Nat Methods. 2020 Jun;17(6):629-635. doi: 10.1038/s41592-020-0837-5. Epub 2020 Jun 1.
Nat Methods. 2020.
PMID: 32483332
Free PMC article.
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