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Modeling complex patterns of differential DNA methylation that associate with gene expression changes.
Nucleic Acids Res. 2017 May 19;45(9):5100-5111. doi: 10.1093/nar/gkx078.
Nucleic Acids Res. 2017.
PMID: 28168293
Free PMC article.
Discovering high-resolution patterns of differential DNA methylation that correlate with gene expression changes.
Vanderkraats ND, Hiken JF, Decker KF, Edwards JR.
Vanderkraats ND, et al.
Nucleic Acids Res. 2013 Aug;41(14):6816-27. doi: 10.1093/nar/gkt482. Epub 2013 Jun 7.
Nucleic Acids Res. 2013.
PMID: 23748561
Free PMC article.
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Epigenetic activation of the prostaglandin receptor EP4 promotes resistance to endocrine therapy for breast cancer.
Hiken JF, McDonald JI, Decker KF, Sanchez C, Hoog J, VanderKraats ND, Jung KL, Akinhanmi M, Rois LE, Ellis MJ, Edwards JR.
Hiken JF, et al. Among authors: vanderkraats nd.
Oncogene. 2017 Apr 20;36(16):2319-2327. doi: 10.1038/onc.2016.397. Epub 2016 Nov 21.
Oncogene. 2017.
PMID: 27869171
Free PMC article.
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DNMT gene expression and methylome in Marek's disease resistant and susceptible chickens prior to and following infection by MDV.
Tian F, Zhan F, VanderKraats ND, Hiken JF, Edwards JR, Zhang H, Zhao K, Song J.
Tian F, et al. Among authors: vanderkraats nd.
Epigenetics. 2013 Apr;8(4):431-44. doi: 10.4161/epi.24361. Epub 2013 Mar 28.
Epigenetics. 2013.
PMID: 23538681
Free PMC article.
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DNMT inhibitors reverse a specific signature of aberrant promoter DNA methylation and associated gene silencing in AML.
Lund K, Cole JJ, VanderKraats ND, McBryan T, Pchelintsev NA, Clark W, Copland M, Edwards JR, Adams PD.
Lund K, et al. Among authors: vanderkraats nd.
Genome Biol. 2014 Aug 30;15(8):406. doi: 10.1186/s13059-014-0406-2.
Genome Biol. 2014.
PMID: 25315154
Free PMC article.
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Methylation Abnormalities in Mammary Carcinoma: The Methylation Suicide Hypothesis.
O'Donnell AH, Edwards JR, Rollins RA, Vander Kraats ND, Su T, Hibshoosh HH, Bestor TH.
O'Donnell AH, et al.
J Cancer Ther. 2014 Dec 1;5(14):1311-1324. doi: 10.4236/jct.2014.514131.
J Cancer Ther. 2014.
PMID: 25960928
Free PMC article.
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Senescent cells harbour features of the cancer epigenome.
Cruickshanks HA, McBryan T, Nelson DM, Vanderkraats ND, Shah PP, van Tuyn J, Singh Rai T, Brock C, Donahue G, Dunican DS, Drotar ME, Meehan RR, Edwards JR, Berger SL, Adams PD.
Cruickshanks HA, et al. Among authors: vanderkraats nd.
Nat Cell Biol. 2013 Dec;15(12):1495-506. doi: 10.1038/ncb2879. Epub 2013 Nov 24.
Nat Cell Biol. 2013.
PMID: 24270890
Free PMC article.
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A finite-sample, distribution-free, probabilistic lower bound on mutual information.
VanderKraats ND, Banerjee A.
VanderKraats ND, et al.
Neural Comput. 2011 Jul;23(7):1862-98. doi: 10.1162/NECO_a_00144. Epub 2011 Apr 14.
Neural Comput. 2011.
PMID: 21492010
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