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Partially Assembled Nucleosome Structures at Atomic Detail.
Rychkov GN, Ilatovskiy AV, Nazarov IB, Shvetsov AV, Lebedev DV, Konev AY, Isaev-Ivanov VV, Onufriev AV. Rychkov GN, et al. Among authors: onufriev av. Biophys J. 2017 Feb 7;112(3):460-472. doi: 10.1016/j.bpj.2016.10.041. Epub 2016 Dec 28. Biophys J. 2017. PMID: 28038734 Free PMC article.
AmberTools.
Case DA, Aktulga HM, Belfon K, Cerutti DS, Cisneros GA, Cruzeiro VWD, Forouzesh N, Giese TJ, Götz AW, Gohlke H, Izadi S, Kasavajhala K, Kaymak MC, King E, Kurtzman T, Lee TS, Li P, Liu J, Luchko T, Luo R, Manathunga M, Machado MR, Nguyen HM, O'Hearn KA, Onufriev AV, Pan F, Pantano S, Qi R, Rahnamoun A, Risheh A, Schott-Verdugo S, Shajan A, Swails J, Wang J, Wei H, Wu X, Wu Y, Zhang S, Zhao S, Zhu Q, Cheatham TE 3rd, Roe DR, Roitberg A, Simmerling C, York DM, Nagan MC, Merz KM Jr. Case DA, et al. Among authors: onufriev av. J Chem Inf Model. 2023 Oct 23;63(20):6183-6191. doi: 10.1021/acs.jcim.3c01153. Epub 2023 Oct 8. J Chem Inf Model. 2023. PMID: 37805934 Free PMC article.
A computational study of nucleosomal DNA flexibility.
Ruscio JZ, Onufriev A. Ruscio JZ, et al. Biophys J. 2006 Dec 1;91(11):4121-32. doi: 10.1529/biophysj.106.082099. Epub 2006 Aug 4. Biophys J. 2006. PMID: 16891359 Free PMC article.
Spermine Condenses DNA, but Not RNA Duplexes.
Katz AM, Tolokh IS, Pabit SA, Baker N, Onufriev AV, Pollack L. Katz AM, et al. Among authors: onufriev av. Biophys J. 2017 Jan 10;112(1):22-30. doi: 10.1016/j.bpj.2016.11.018. Biophys J. 2017. PMID: 28076812 Free PMC article.
90 results