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Folding of guanine quadruplex molecules-funnel-like mechanism or kinetic partitioning? An overview from MD simulation studies.
Šponer J, Bussi G, Stadlbauer P, Kührová P, Banáš P, Islam B, Haider S, Neidle S, Otyepka M. Šponer J, et al. Among authors: bussi g. Biochim Biophys Acta Gen Subj. 2017 May;1861(5 Pt B):1246-1263. doi: 10.1016/j.bbagen.2016.12.008. Epub 2016 Dec 13. Biochim Biophys Acta Gen Subj. 2017. PMID: 27979677 Free article. Review.
RNA folding pathways in stop motion.
Bottaro S, Gil-Ley A, Bussi G. Bottaro S, et al. Among authors: bussi g. Nucleic Acids Res. 2016 Jul 8;44(12):5883-91. doi: 10.1093/nar/gkw239. Epub 2016 Apr 18. Nucleic Acids Res. 2016. PMID: 27091499 Free PMC article.
Free Energy Landscape of GAGA and UUCG RNA Tetraloops.
Bottaro S, Banáš P, Šponer J, Bussi G. Bottaro S, et al. Among authors: bussi g. J Phys Chem Lett. 2016 Oct 20;7(20):4032-4038. doi: 10.1021/acs.jpclett.6b01905. Epub 2016 Sep 28. J Phys Chem Lett. 2016. PMID: 27661094
RNA Structural Dynamics As Captured by Molecular Simulations: A Comprehensive Overview.
Šponer J, Bussi G, Krepl M, Banáš P, Bottaro S, Cunha RA, Gil-Ley A, Pinamonti G, Poblete S, Jurečka P, Walter NG, Otyepka M. Šponer J, et al. Among authors: bussi g. Chem Rev. 2018 Apr 25;118(8):4177-4338. doi: 10.1021/acs.chemrev.7b00427. Epub 2018 Jan 3. Chem Rev. 2018. PMID: 29297679 Free PMC article. Review.
112 results