Hirsekorn A - Search Results

1

A Multi-step Transcriptional and Chromatin State Cascade Underlies Motor Neuron Programming from Embryonic Stem Cells.

Velasco S, Ibrahim MM, Kakumanu A, Garipler G, Aydin B, Al-Sayegh MA, Hirsekorn A, Abdul-Rahman F, Satija R, Ohler U, Mahony S, Mazzoni EO. Velasco S, et al. Among authors: hirsekorn a. Cell Stem Cell. 2017 Feb 2;20(2):205-217.e8. doi: 10.1016/j.stem.2016.11.006. Epub 2016 Dec 8. Cell Stem Cell. 2017. PMID: 27939218 Free PMC article.

2

Identifying RBP Targets with RIP-seq.

Wessels HH, Hirsekorn A, Ohler U, Mukherjee N. Wessels HH, et al. Among authors: hirsekorn a. Methods Mol Biol. 2016;1358:141-52. doi: 10.1007/978-1-4939-3067-8_9. Methods Mol Biol. 2016. PMID: 26463382

3

Detecting actively translated open reading frames in ribosome profiling data.

Calviello L, Mukherjee N, Wyler E, Zauber H, Hirsekorn A, Selbach M, Landthaler M, Obermayer B, Ohler U. Calviello L, et al. Among authors: hirsekorn a. Nat Methods. 2016 Feb;13(2):165-70. doi: 10.1038/nmeth.3688. Epub 2015 Dec 14. Nat Methods. 2016. PMID: 26657557

4

Integrative classification of human coding and noncoding genes through RNA metabolism profiles.

Mukherjee N, Calviello L, Hirsekorn A, de Pretis S, Pelizzola M, Ohler U. Mukherjee N, et al. Among authors: hirsekorn a. Nat Struct Mol Biol. 2017 Jan;24(1):86-96. doi: 10.1038/nsmb.3325. Epub 2016 Nov 21. Nat Struct Mol Biol. 2017. PMID: 27870833

5

Determinants of promoter and enhancer transcription directionality in metazoans.

Ibrahim MM, Karabacak A, Glahs A, Kolundzic E, Hirsekorn A, Carda A, Tursun B, Zinzen RP, Lacadie SA, Ohler U. Ibrahim MM, et al. Among authors: hirsekorn a. Nat Commun. 2018 Oct 26;9(1):4472. doi: 10.1038/s41467-018-06962-z. Nat Commun. 2018. PMID: 30367057 Free PMC article.

6

Reproducible inference of transcription factor footprints in ATAC-seq and DNase-seq datasets using protocol-specific bias modeling.

Karabacak Calviello A, Hirsekorn A, Wurmus R, Yusuf D, Ohler U. Karabacak Calviello A, et al. Among authors: hirsekorn a. Genome Biol. 2019 Feb 21;20(1):42. doi: 10.1186/s13059-019-1654-y. Genome Biol. 2019. PMID: 30791920 Free PMC article.

7

Global identification of functional microRNA-mRNA interactions in Drosophila.

Wessels HH, Lebedeva S, Hirsekorn A, Wurmus R, Akalin A, Mukherjee N, Ohler U. Wessels HH, et al. Among authors: hirsekorn a. Nat Commun. 2019 Apr 9;10(1):1626. doi: 10.1038/s41467-019-09586-z. Nat Commun. 2019. PMID: 30967537 Free PMC article.

8

Integrated proteogenomic deep sequencing and analytics accurately identify non-canonical peptides in tumor immunopeptidomes.

Chong C, Müller M, Pak H, Harnett D, Huber F, Grun D, Leleu M, Auger A, Arnaud M, Stevenson BJ, Michaux J, Bilic I, Hirsekorn A, Calviello L, Simó-Riudalbas L, Planet E, Lubiński J, Bryśkiewicz M, Wiznerowicz M, Xenarios I, Zhang L, Trono D, Harari A, Ohler U, Coukos G, Bassani-Sternberg M. Chong C, et al. Among authors: hirsekorn a. Nat Commun. 2020 Mar 10;11(1):1293. doi: 10.1038/s41467-020-14968-9. Nat Commun. 2020. PMID: 32157095 Free PMC article.

9

Quantification of translation uncovers the functions of the alternative transcriptome.

Calviello L, Hirsekorn A, Ohler U. Calviello L, et al. Among authors: hirsekorn a. Nat Struct Mol Biol. 2020 Aug;27(8):717-725. doi: 10.1038/s41594-020-0450-4. Epub 2020 Jun 29. Nat Struct Mol Biol. 2020. PMID: 32601440

10

Single-cell-resolved dynamics of chromatin architecture delineate cell and regulatory states in zebrafish embryos.

McGarvey AC, Kopp W, Vučićević D, Mattonet K, Kempfer R, Hirsekorn A, Bilić I, Gil M, Trinks A, Merks AM, Panáková D, Pombo A, Akalin A, Junker JP, Stainier DYR, Garfield D, Ohler U, Lacadie SA. McGarvey AC, et al. Among authors: hirsekorn a. Cell Genom. 2022 Jan 13;2(1):100083. doi: 10.1016/j.xgen.2021.100083. eCollection 2022 Jan 12. Cell Genom. 2022. PMID: 36777038 Free PMC article.

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