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Strategies to improve reference databases for soil microbiomes.
Choi J, Yang F, Stepanauskas R, Cardenas E, Garoutte A, Williams R, Flater J, Tiedje JM, Hofmockel KS, Gelder B, Howe A. Choi J, et al. Among authors: tiedje jm. ISME J. 2017 Apr;11(4):829-834. doi: 10.1038/ismej.2016.168. Epub 2016 Dec 9. ISME J. 2017. PMID: 27935589 Free PMC article. No abstract available.
Microbial communities in contaminated sediments, associated with bioremediation of uranium to submicromolar levels.
Cardenas E, Wu WM, Leigh MB, Carley J, Carroll S, Gentry T, Luo J, Watson D, Gu B, Ginder-Vogel M, Kitanidis PK, Jardine PM, Zhou J, Criddle CS, Marsh TL, Tiedje JM. Cardenas E, et al. Among authors: tiedje jm. Appl Environ Microbiol. 2008 Jun;74(12):3718-29. doi: 10.1128/AEM.02308-07. Epub 2008 May 2. Appl Environ Microbiol. 2008. PMID: 18456853 Free PMC article.
The Ribosomal Database Project: improved alignments and new tools for rRNA analysis.
Cole JR, Wang Q, Cardenas E, Fish J, Chai B, Farris RJ, Kulam-Syed-Mohideen AS, McGarrell DM, Marsh T, Garrity GM, Tiedje JM. Cole JR, et al. Among authors: tiedje jm. Nucleic Acids Res. 2009 Jan;37(Database issue):D141-5. doi: 10.1093/nar/gkn879. Epub 2008 Nov 12. Nucleic Acids Res. 2009. PMID: 19004872 Free PMC article.
Biogeography of two cold-adapted genera: Psychrobacter and Exiguobacterium.
Rodrigues DF, da C Jesus E, Ayala-Del-Río HL, Pellizari VH, Gilichinsky D, Sepulveda-Torres L, Tiedje JM. Rodrigues DF, et al. Among authors: tiedje jm. ISME J. 2009 Jun;3(6):658-65. doi: 10.1038/ismej.2009.25. Epub 2009 Mar 26. ISME J. 2009. PMID: 19322243 Free article.
Significant association between sulfate-reducing bacteria and uranium-reducing microbial communities as revealed by a combined massively parallel sequencing-indicator species approach.
Cardenas E, Wu WM, Leigh MB, Carley J, Carroll S, Gentry T, Luo J, Watson D, Gu B, Ginder-Vogel M, Kitanidis PK, Jardine PM, Zhou J, Criddle CS, Marsh TL, Tiedje JM. Cardenas E, et al. Among authors: tiedje jm. Appl Environ Microbiol. 2010 Oct;76(20):6778-86. doi: 10.1128/AEM.01097-10. Epub 2010 Aug 20. Appl Environ Microbiol. 2010. PMID: 20729318 Free PMC article.
Scaling metagenome sequence assembly with probabilistic de Bruijn graphs.
Pell J, Hintze A, Canino-Koning R, Howe A, Tiedje JM, Brown CT. Pell J, et al. Among authors: tiedje jm. Proc Natl Acad Sci U S A. 2012 Aug 14;109(33):13272-7. doi: 10.1073/pnas.1121464109. Epub 2012 Jul 30. Proc Natl Acad Sci U S A. 2012. PMID: 22847406 Free PMC article.
Tackling soil diversity with the assembly of large, complex metagenomes.
Howe AC, Jansson JK, Malfatti SA, Tringe SG, Tiedje JM, Brown CT. Howe AC, et al. Among authors: tiedje jm. Proc Natl Acad Sci U S A. 2014 Apr 1;111(13):4904-9. doi: 10.1073/pnas.1402564111. Epub 2014 Mar 14. Proc Natl Acad Sci U S A. 2014. PMID: 24632729 Free PMC article.
494 results