Sosnick TR - Search Results

1

Aromatic claw: A new fold with high aromatic content that evades structural prediction.

Sachleben JR, Adhikari AN, Gawlak G, Hoey RJ, Liu G, Joachimiak A, Montelione GT, Sosnick TR, Koide S. Sachleben JR, et al. Among authors: sosnick tr. Protein Sci. 2017 Feb;26(2):208-217. doi: 10.1002/pro.3069. Epub 2016 Nov 10. Protein Sci. 2017. PMID: 27750371 Free PMC article.

2

Helix, sheet, and polyproline II frequencies and strong nearest neighbor effects in a restricted coil library.

Jha AK, Colubri A, Zaman MH, Koide S, Sosnick TR, Freed KF. Jha AK, et al. Among authors: sosnick tr. Biochemistry. 2005 Jul 19;44(28):9691-702. doi: 10.1021/bi0474822. Biochemistry. 2005. PMID: 16008354

3

On the precision of experimentally determined protein folding rates and phi-values.

de los Rios MA, Muralidhara BK, Wildes D, Sosnick TR, Marqusee S, Wittung-Stafshede P, Plaxco KW, Ruczinski I. de los Rios MA, et al. Among authors: sosnick tr. Protein Sci. 2006 Mar;15(3):553-63. doi: 10.1110/ps.051870506. Protein Sci. 2006. PMID: 16501226 Free PMC article.

4

Reduced C(beta) statistical potentials can outperform all-atom potentials in decoy identification.

Fitzgerald JE, Jha AK, Colubri A, Sosnick TR, Freed KF. Fitzgerald JE, et al. Among authors: sosnick tr. Protein Sci. 2007 Oct;16(10):2123-39. doi: 10.1110/ps.072939707. Protein Sci. 2007. PMID: 17893359 Free PMC article.

5

Mimicking the folding pathway to improve homology-free protein structure prediction.

DeBartolo J, Colubri A, Jha AK, Fitzgerald JE, Freed KF, Sosnick TR. DeBartolo J, et al. Among authors: sosnick tr. Proc Natl Acad Sci U S A. 2009 Mar 10;106(10):3734-9. doi: 10.1073/pnas.0811363106. Epub 2009 Feb 23. Proc Natl Acad Sci U S A. 2009. PMID: 19237560 Free PMC article.

6

Protein structure prediction enhanced with evolutionary diversity: SPEED.

DeBartolo J, Hocky G, Wilde M, Xu J, Freed KF, Sosnick TR. DeBartolo J, et al. Among authors: sosnick tr. Protein Sci. 2010 Mar;19(3):520-34. doi: 10.1002/pro.330. Protein Sci. 2010. PMID: 20066664 Free PMC article.

7

Rationally improving LOV domain-based photoswitches.

Strickland D, Yao X, Gawlak G, Rosen MK, Gardner KH, Sosnick TR. Strickland D, et al. Among authors: sosnick tr. Nat Methods. 2010 Aug;7(8):623-6. doi: 10.1038/nmeth.1473. Epub 2010 Jun 20. Nat Methods. 2010. PMID: 20562867 Free PMC article.

8

Biochemistry. How proteins fold.

Sosnick TR, Hinshaw JR. Sosnick TR, et al. Science. 2011 Oct 28;334(6055):464-5. doi: 10.1126/science.1214018. Science. 2011. PMID: 22034424 No abstract available.

9

Modeling large regions in proteins: applications to loops, termini, and folding.

Adhikari AN, Peng J, Wilde M, Xu J, Freed KF, Sosnick TR. Adhikari AN, et al. Among authors: sosnick tr. Protein Sci. 2012 Jan;21(1):107-21. doi: 10.1002/pro.767. Epub 2011 Dec 5. Protein Sci. 2012. PMID: 22095743 Free PMC article.

10

The folding transition state of protein L is extensive with nonnative interactions (and not small and polarized).

Yoo TY, Adhikari A, Xia Z, Huynh T, Freed KF, Zhou R, Sosnick TR. Yoo TY, et al. Among authors: sosnick tr. J Mol Biol. 2012 Jul 13;420(3):220-34. doi: 10.1016/j.jmb.2012.04.013. Epub 2012 Apr 18. J Mol Biol. 2012. PMID: 22522126 Free PMC article.

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