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Deciphering the Innate Lymphoid Cell Transcriptional Program.
Seillet C, Mielke LA, Amann-Zalcenstein DB, Su S, Gao J, Almeida FF, Shi W, Ritchie ME, Naik SH, Huntington ND, Carotta S, Belz GT. Seillet C, et al. Among authors: ritchie me. Cell Rep. 2016 Oct 4;17(2):436-447. doi: 10.1016/j.celrep.2016.09.025. Cell Rep. 2016. PMID: 27705792 Free article.
Illumina WG-6 BeadChip strips should be normalized separately.
Shi W, Banerjee A, Ritchie ME, Gerondakis S, Smyth GK. Shi W, et al. Among authors: ritchie me. BMC Bioinformatics. 2009 Nov 11;10:372. doi: 10.1186/1471-2105-10-372. BMC Bioinformatics. 2009. PMID: 19903361 Free PMC article.
BeadArray expression analysis using bioconductor.
Ritchie ME, Dunning MJ, Smith ML, Shi W, Lynch AG. Ritchie ME, et al. PLoS Comput Biol. 2011 Dec;7(12):e1002276. doi: 10.1371/journal.pcbi.1002276. Epub 2011 Dec 1. PLoS Comput Biol. 2011. PMID: 22144879 Free PMC article.
RNA-seq analysis is easy as 1-2-3 with limma, Glimma and edgeR.
Law CW, Alhamdoosh M, Su S, Dong X, Tian L, Smyth GK, Ritchie ME. Law CW, et al. Among authors: ritchie me. F1000Res. 2016 Jun 17;5:ISCB Comm J-1408. doi: 10.12688/f1000research.9005.3. eCollection 2016. F1000Res. 2016. PMID: 27441086 Free PMC article.
Glimma: interactive graphics for gene expression analysis.
Su S, Law CW, Ah-Cann C, Asselin-Labat ML, Blewitt ME, Ritchie ME. Su S, et al. Among authors: ritchie me. Bioinformatics. 2017 Jul 1;33(13):2050-2052. doi: 10.1093/bioinformatics/btx094. Bioinformatics. 2017. PMID: 28203714 Free PMC article.
175 results