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Building two indica rice reference genomes with PacBio long-read and Illumina paired-end sequencing data.
Zhang J, Chen LL, Sun S, Kudrna D, Copetti D, Li W, Mu T, Jiao WB, Xing F, Lee S, Talag J, Song JM, Du B, Xie W, Luo M, Maldonado CE, Goicoechea JL, Xiong L, Wu C, Xing Y, Zhou DX, Yu S, Zhao Y, Wang G, Yu Y, Luo Y, Hurtado BE, Danowitz A, Wing RA, Zhang Q. Zhang J, et al. Among authors: maldonado ce. Sci Data. 2016 Sep 13;3:160076. doi: 10.1038/sdata.2016.76. Sci Data. 2016. PMID: 27622467 Free PMC article.
Extensive sequence divergence between the reference genomes of two elite indica rice varieties Zhenshan 97 and Minghui 63.
Zhang J, Chen LL, Xing F, Kudrna DA, Yao W, Copetti D, Mu T, Li W, Song JM, Xie W, Lee S, Talag J, Shao L, An Y, Zhang CL, Ouyang Y, Sun S, Jiao WB, Lv F, Du B, Luo M, Maldonado CE, Goicoechea JL, Xiong L, Wu C, Xing Y, Zhou DX, Yu S, Zhao Y, Wang G, Yu Y, Luo Y, Zhou ZW, Hurtado BE, Danowitz A, Wing RA, Zhang Q. Zhang J, et al. Among authors: maldonado ce. Proc Natl Acad Sci U S A. 2016 Aug 30;113(35):E5163-71. doi: 10.1073/pnas.1611012113. Epub 2016 Aug 17. Proc Natl Acad Sci U S A. 2016. PMID: 27535938 Free PMC article.
The genome sequence of African rice (Oryza glaberrima) and evidence for independent domestication.
Wang M, Yu Y, Haberer G, Marri PR, Fan C, Goicoechea JL, Zuccolo A, Song X, Kudrna D, Ammiraju JS, Cossu RM, Maldonado C, Chen J, Lee S, Sisneros N, de Baynast K, Golser W, Wissotski M, Kim W, Sanchez P, Ndjiondjop MN, Sanni K, Long M, Carney J, Panaud O, Wicker T, Machado CA, Chen M, Mayer KF, Rounsley S, Wing RA. Wang M, et al. Nat Genet. 2014 Sep;46(9):982-8. doi: 10.1038/ng.3044. Epub 2014 Jul 27. Nat Genet. 2014. PMID: 25064006 Free PMC article.
SNP-based mixed model association of growth- and yield-related traits in popcorn.
Mafra GS, Amaral Júnior ATD, Almeida Filho JE, Vivas M, Santos PHAD, Santos JS, Pena GF, Lima VJ, Kamphorst SH, Oliveira FT, Souza YP, Schwantes IA, Santos TO, Bispo RB, Maldonado C, Mora F. Mafra GS, et al. PLoS One. 2019 Jun 25;14(6):e0218552. doi: 10.1371/journal.pone.0218552. eCollection 2019. PLoS One. 2019. PMID: 31237892 Free PMC article.
Regional Heritability Mapping of Quantitative Trait Loci Controlling Traits Related to Growth and Productivity in Popcorn (Zea mays L.).
Mafra GS, de Almeida Filho JE, do Amaral Junior AT, Maldonado C, Kamphorst SH, de Lima VJ, Dos Santos Junior DR, Leite JT, Santos PHAD, de Oliveira Santos T, Bispo RB, de Oliveira UA, Pinto VB, Viana AP, Correa CCG, Ahmar S, Mora-Poblete F. Mafra GS, et al. Plants (Basel). 2021 Sep 6;10(9):1845. doi: 10.3390/plants10091845. Plants (Basel). 2021. PMID: 34579378 Free PMC article.
15 results