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Interactive Exploration, Analysis, and Visualization of Complex Phenome-Genome Datasets with ASPIREdb.
Hum Mutat. 2016 Aug;37(8):719-26. doi: 10.1002/humu.23011. Epub 2016 May 20.
Hum Mutat. 2016.
PMID: 27158917
Free PMC article.
Whole genome sequencing and variant discovery in the ASPIRE autism spectrum disorder cohort.
Callaghan DB, Rogic S, Tan PPC, Calli K, Qiao Y, Baldwin R, Jacobson M, Belmadani M, Holmes N, Yu C, Li Y, Li Y, Kurtzke FE, Kuzeljevic B, Yu AY, Hudson M, Mcaughton AJM, Xu Y, Dionne-Laporte A, Girard S, Liang P, Separovic ER, Liu X, Rouleau G, Pavlidis P, Lewis MES.
Callaghan DB, et al. Among authors: belmadani m.
Clin Genet. 2019 Sep;96(3):199-206. doi: 10.1111/cge.13556. Epub 2019 May 30.
Clin Genet. 2019.
PMID: 31038196
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VariCarta: A Comprehensive Database of Harmonized Genomic Variants Found in Autism Spectrum Disorder Sequencing Studies.
Belmadani M, Jacobson M, Holmes N, Phan M, Nguyen T, Pavlidis P, Rogic S.
Belmadani M, et al.
Autism Res. 2019 Dec;12(12):1728-1736. doi: 10.1002/aur.2236. Epub 2019 Nov 9.
Autism Res. 2019.
PMID: 31705629
Review.
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Curation of over 10 000 transcriptomic studies to enable data reuse.
Lim N, Tesar S, Belmadani M, Poirier-Morency G, Mancarci BO, Sicherman J, Jacobson M, Leong J, Tan P, Pavlidis P.
Lim N, et al. Among authors: belmadani m.
Database (Oxford). 2021 Feb 18;2021:baab006. doi: 10.1093/database/baab006.
Database (Oxford). 2021.
PMID: 33599246
Free PMC article.
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Assessing Transcriptome Quality in Patch-Seq Datasets.
Tripathy SJ, Toker L, Bomkamp C, Mancarci BO, Belmadani M, Pavlidis P.
Tripathy SJ, et al. Among authors: belmadani m.
Front Mol Neurosci. 2018 Oct 8;11:363. doi: 10.3389/fnmol.2018.00363. eCollection 2018.
Front Mol Neurosci. 2018.
PMID: 30349457
Free PMC article.
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Multi-model functionalization of disease-associated PTEN missense mutations identifies multiple molecular mechanisms underlying protein dysfunction.
Post KL, Belmadani M, Ganguly P, Meili F, Dingwall R, McDiarmid TA, Meyers WM, Herrington C, Young BP, Callaghan DB, Rogic S, Edwards M, Niciforovic A, Cau A, Rankin CH, O'Connor TP, Bamji SX, Loewen CJR, Allan DW, Pavlidis P, Haas K.
Post KL, et al. Among authors: belmadani m.
Nat Commun. 2020 Apr 29;11(1):2073. doi: 10.1038/s41467-020-15943-0.
Nat Commun. 2020.
PMID: 32350270
Free PMC article.
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Systematic phenomics analysis of autism-associated genes reveals parallel networks underlying reversible impairments in habituation.
McDiarmid TA, Belmadani M, Liang J, Meili F, Mathews EA, Mullen GP, Hendi A, Wong WR, Rand JB, Mizumoto K, Haas K, Pavlidis P, Rankin CH.
McDiarmid TA, et al. Among authors: belmadani m.
Proc Natl Acad Sci U S A. 2020 Jan 7;117(1):656-667. doi: 10.1073/pnas.1912049116. Epub 2019 Nov 21.
Proc Natl Acad Sci U S A. 2020.
PMID: 31754030
Free PMC article.
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A comprehensive analysis of 3' end sequencing data sets reveals novel polyadenylation signals and the repressive role of heterogeneous ribonucleoprotein C on cleavage and polyadenylation.
Gruber AJ, Schmidt R, Gruber AR, Martin G, Ghosh S, Belmadani M, Keller W, Zavolan M.
Gruber AJ, et al. Among authors: belmadani m.
Genome Res. 2016 Aug;26(8):1145-59. doi: 10.1101/gr.202432.115. Epub 2016 Jul 5.
Genome Res. 2016.
PMID: 27382025
Free PMC article.
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