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Deep RNA profiling identified CLOCK and molecular clock genes as pathophysiological signatures in collagen VI myopathy.
Scotton C, Bovolenta M, Schwartz E, Falzarano MS, Martoni E, Passarelli C, Armaroli A, Osman H, Rodolico C, Messina S, Pegoraro E, D'Amico A, Bertini E, Gualandi F, Neri M, Selvatici R, Boffi P, Maioli MA, Lochmüller H, Straub V, Bushby K, Castrignanò T, Pesole G, Sabatelli P, Merlini L, Braghetta P, Bonaldo P, Bernardi P, Foley R, Cirak S, Zaharieva I, Muntoni F, Capitanio D, Gelfi C, Kotelnikova E, Yuryev A, Lebowitz M, Zhang X, Hodge BA, Esser KA, Ferlini A. Scotton C, et al. Among authors: castrignano t. J Cell Sci. 2016 Apr 15;129(8):1671-84. doi: 10.1242/jcs.175927. Epub 2016 Mar 4. J Cell Sci. 2016. PMID: 26945058 Free PMC article.
Exploring the RNA editing potential of RNA-Seq data by ExpEdit.
D'Antonio M, Picardi E, Castrignanò T, D'Erchia AM, Pesole G. D'Antonio M, et al. Among authors: castrignano t. Methods Mol Biol. 2015;1269:327-38. doi: 10.1007/978-1-4939-2291-8_20. Methods Mol Biol. 2015. PMID: 25577388
RAP: A Web Tool for RNA-Seq Data Analysis.
D'Antonio M, Libro P, Picardi E, Pesole G, Castrignanò T. D'Antonio M, et al. Among authors: castrignano t. Methods Mol Biol. 2021;2284:393-415. doi: 10.1007/978-1-0716-1307-8_21. Methods Mol Biol. 2021. PMID: 33835454
RNA Editing Detection in HPC Infrastructures.
Lo Giudice C, Mansi L, Flati T, Gioiosa S, Chillemi G, Libro P, Castrignanò T, Pesole G, Picardi E. Lo Giudice C, et al. Among authors: castrignano t. Methods Mol Biol. 2021;2284:253-270. doi: 10.1007/978-1-0716-1307-8_14. Methods Mol Biol. 2021. PMID: 33835447
SpliceAid-F: a database of human splicing factors and their RNA-binding sites.
Giulietti M, Piva F, D'Antonio M, D'Onorio De Meo P, Paoletti D, Castrignanò T, D'Erchia AM, Picardi E, Zambelli F, Principato G, Pavesi G, Pesole G. Giulietti M, et al. Among authors: castrignano t. Nucleic Acids Res. 2013 Jan;41(Database issue):D125-31. doi: 10.1093/nar/gks997. Epub 2012 Oct 30. Nucleic Acids Res. 2013. PMID: 23118479 Free PMC article.
VDR primary targets by genome-wide transcriptional profiling.
Goeman F, De Nicola F, D'Onorio De Meo P, Pallocca M, Elmi B, Castrignanò T, Pesole G, Strano S, Blandino G, Fanciulli M, Muti P. Goeman F, et al. Among authors: castrignano t. J Steroid Biochem Mol Biol. 2014 Sep;143:348-56. doi: 10.1016/j.jsbmb.2014.03.007. Epub 2014 Apr 13. J Steroid Biochem Mol Biol. 2014. PMID: 24726990 Free article.
62 results