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Toward clinical genomics in everyday medicine: perspectives and recommendations.
Delaney SK, Hultner ML, Jacob HJ, Ledbetter DH, McCarthy JJ, Ball M, Beckman KB, Belmont JW, Bloss CS, Christman MF, Cosgrove A, Damiani SA, Danis T, Delledonne M, Dougherty MJ, Dudley JT, Faucett WA, Friedman JR, Haase DH, Hays TS, Heilsberg S, Huber J, Kaminsky L, Ledbetter N, Lee WH, Levin E, Libiger O, Linderman M, Love RL, Magnus DC, Martland A, McClure SL, Megill SE, Messier H, Nussbaum RL, Palaniappan L, Patay BA, Popovich BW, Quackenbush J, Savant MJ, Su MM, Terry SF, Tucker S, Wong WT, Green RC. Delaney SK, et al. Among authors: quackenbush j. Expert Rev Mol Diagn. 2016;16(5):521-32. doi: 10.1586/14737159.2016.1146593. Epub 2016 Feb 24. Expert Rev Mol Diagn. 2016. PMID: 26810587 Free PMC article.
Data Analysis Strategies in Medical Imaging.
Parmar C, Barry JD, Hosny A, Quackenbush J, Aerts HJWL. Parmar C, et al. Among authors: quackenbush j. Clin Cancer Res. 2018 Aug 1;24(15):3492-3499. doi: 10.1158/1078-0432.CCR-18-0385. Epub 2018 Mar 26. Clin Cancer Res. 2018. PMID: 29581134 Free PMC article. Review.
RNA-Seq analysis in MeV.
Howe EA, Sinha R, Schlauch D, Quackenbush J. Howe EA, et al. Among authors: quackenbush j. Bioinformatics. 2011 Nov 15;27(22):3209-10. doi: 10.1093/bioinformatics/btr490. Epub 2011 Oct 5. Bioinformatics. 2011. PMID: 21976420 Free PMC article.
Smooth quantile normalization.
Hicks SC, Okrah K, Paulson JN, Quackenbush J, Irizarry RA, Bravo HC. Hicks SC, et al. Among authors: quackenbush j. Biostatistics. 2018 Apr 1;19(2):185-198. doi: 10.1093/biostatistics/kxx028. Biostatistics. 2018. PMID: 29036413 Free PMC article.
High-Throughput Sequencing in Respiratory, Critical Care, and Sleep Medicine Research. An Official American Thoracic Society Workshop Report.
Hersh CP, Adcock IM, Celedón JC, Cho MH, Christiani DC, Himes BE, Kaminski N, Mathias RA, Meyers DA, Quackenbush J, Redline S, Steiling KA, Tabor HK, Tobin MD, Wurfel MM, Yang IV, Koppelman GH. Hersh CP, et al. Among authors: quackenbush j. Ann Am Thorac Soc. 2019 Jan;16(1):1-16. doi: 10.1513/AnnalsATS.201810-716WS. Ann Am Thorac Soc. 2019. PMID: 30592451 Free PMC article.
Profiles of genomic instability in high-grade serous ovarian cancer predict treatment outcome.
Wang ZC, Birkbak NJ, Culhane AC, Drapkin R, Fatima A, Tian R, Schwede M, Alsop K, Daniels KE, Piao H, Liu J, Etemadmoghadam D, Miron A, Salvesen HB, Mitchell G, DeFazio A, Quackenbush J, Berkowitz RS, Iglehart JD, Bowtell DD; Australian Ovarian Cancer Study Group; Matulonis UA. Wang ZC, et al. Among authors: quackenbush j. Clin Cancer Res. 2012 Oct 15;18(20):5806-15. doi: 10.1158/1078-0432.CCR-12-0857. Epub 2012 Aug 21. Clin Cancer Res. 2012. PMID: 22912389 Free PMC article.
Artificial intelligence in radiology.
Hosny A, Parmar C, Quackenbush J, Schwartz LH, Aerts HJWL. Hosny A, et al. Among authors: quackenbush j. Nat Rev Cancer. 2018 Aug;18(8):500-510. doi: 10.1038/s41568-018-0016-5. Nat Rev Cancer. 2018. PMID: 29777175 Free PMC article. Review.
Somatic Mutations Drive Distinct Imaging Phenotypes in Lung Cancer.
Rios Velazquez E, Parmar C, Liu Y, Coroller TP, Cruz G, Stringfield O, Ye Z, Makrigiorgos M, Fennessy F, Mak RH, Gillies R, Quackenbush J, Aerts HJWL. Rios Velazquez E, et al. Among authors: quackenbush j. Cancer Res. 2017 Jul 15;77(14):3922-3930. doi: 10.1158/0008-5472.CAN-17-0122. Epub 2017 May 31. Cancer Res. 2017. PMID: 28566328 Free PMC article.
Decoding tumour phenotype by noninvasive imaging using a quantitative radiomics approach.
Aerts HJ, Velazquez ER, Leijenaar RT, Parmar C, Grossmann P, Carvalho S, Bussink J, Monshouwer R, Haibe-Kains B, Rietveld D, Hoebers F, Rietbergen MM, Leemans CR, Dekker A, Quackenbush J, Gillies RJ, Lambin P. Aerts HJ, et al. Among authors: quackenbush j. Nat Commun. 2014 Jun 3;5:4006. doi: 10.1038/ncomms5006. Nat Commun. 2014. PMID: 24892406 Free PMC article.
355 results