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Confounding Factors in the Transcriptome Analysis of an In-Vivo Exposure Experiment.
Bruning O, Rodenburg W, Wackers PF, van Oostrom C, Jonker MJ, Dekker RJ, Rauwerda H, Ensink WA, de Vries A, Breit TM. Bruning O, et al. Among authors: rauwerda h. PLoS One. 2016 Jan 20;11(1):e0145252. doi: 10.1371/journal.pone.0145252. eCollection 2016. PLoS One. 2016. PMID: 26789003 Free PMC article.
Valuable lessons-learned in transcriptomics experimentation.
Bruning O, Rauwerda H, Dekker RJ, de Leeuw WC, Wackers PF, Ensink WA, Jonker MJ, Breit TM. Bruning O, et al. Among authors: rauwerda h. Transcription. 2015;6(3):51-5. doi: 10.1080/21541264.2015.1064195. Transcription. 2015. PMID: 26098945 Free PMC article. Review.
The absence of Ser389 phosphorylation in p53 affects the basal gene expression level of many p53-dependent genes and alters the biphasic response to UV exposure in mouse embryonic fibroblasts.
Bruins W, Bruning O, Jonker MJ, Zwart E, van der Hoeven TV, Pennings JL, Rauwerda H, de Vries A, Breit TM. Bruins W, et al. Among authors: rauwerda h. Mol Cell Biol. 2008 Mar;28(6):1974-87. doi: 10.1128/MCB.01610-07. Epub 2008 Jan 14. Mol Cell Biol. 2008. PMID: 18195040 Free PMC article.
Improving small RNA-seq by using a synthetic spike-in set for size-range quality control together with a set for data normalization.
Locati MD, Terpstra I, de Leeuw WC, Kuzak M, Rauwerda H, Ensink WA, van Leeuwen S, Nehrdich U, Spaink HP, Jonker MJ, Breit TM, Dekker RJ. Locati MD, et al. Among authors: rauwerda h. Nucleic Acids Res. 2015 Aug 18;43(14):e89. doi: 10.1093/nar/gkv303. Epub 2015 Apr 13. Nucleic Acids Res. 2015. PMID: 25870415 Free PMC article.
27 results