Vera D - Search Results

1

Comprehensive nucleosome mapping of the human genome in cancer progression.

Druliner BR, Vera D, Johnson R, Ruan X, Apone LM, Dimalanta ET, Stewart FJ, Boardman L, Dennis JH. Druliner BR, et al. Among authors: vera d. Oncotarget. 2016 Mar 22;7(12):13429-45. doi: 10.18632/oncotarget.6811. Oncotarget. 2016. PMID: 26735342 Free PMC article.

2

Genome-wide prediction of nucleosome occupancy in maize reveals plant chromatin structural features at genes and other elements at multiple scales.

Fincher JA, Vera DL, Hughes DD, McGinnis KM, Dennis JH, Bass HW. Fincher JA, et al. Among authors: vera dl. Plant Physiol. 2013 Jun;162(2):1127-41. doi: 10.1104/pp.113.216432. Epub 2013 Apr 9. Plant Physiol. 2013. PMID: 23572549 Free PMC article.

3

Chromatin patterns associated with lung adenocarcinoma progression.

Druliner BR, Fincher JA, Sexton BS, Vera DL, Roche M, Lyle S, Dennis JH. Druliner BR, et al. Cell Cycle. 2013 May 15;12(10):1536-43. doi: 10.4161/cc.24664. Epub 2013 Apr 17. Cell Cycle. 2013. PMID: 23598721 Free PMC article.

4

The spring-loaded genome: nucleosome redistributions are widespread, transient, and DNA-directed.

Sexton BS, Avey D, Druliner BR, Fincher JA, Vera DL, Grau DJ, Borowsky ML, Gupta S, Girimurugan SB, Chicken E, Zhang J, Noble WS, Zhu F, Kingston RE, Dennis JH. Sexton BS, et al. Among authors: vera dl. Genome Res. 2014 Feb;24(2):251-9. doi: 10.1101/gr.160150.113. Epub 2013 Dec 5. Genome Res. 2014. PMID: 24310001 Free PMC article.

5

Differential nuclease sensitivity profiling of chromatin reveals biochemical footprints coupled to gene expression and functional DNA elements in maize.

Vera DL, Madzima TF, Labonne JD, Alam MP, Hoffman GG, Girimurugan SB, Zhang J, McGinnis KM, Dennis JH, Bass HW. Vera DL, et al. Plant Cell. 2014 Oct;26(10):3883-93. doi: 10.1105/tpc.114.130609. Epub 2014 Oct 31. Plant Cell. 2014. PMID: 25361955 Free PMC article.

6

Topologically associating domains are stable units of replication-timing regulation.

Pope BD, Ryba T, Dileep V, Yue F, Wu W, Denas O, Vera DL, Wang Y, Hansen RS, Canfield TK, Thurman RE, Cheng Y, Gülsoy G, Dennis JH, Snyder MP, Stamatoyannopoulos JA, Taylor J, Hardison RC, Kahveci T, Ren B, Gilbert DM. Pope BD, et al. Among authors: vera dl. Nature. 2014 Nov 20;515(7527):402-5. doi: 10.1038/nature13986. Nature. 2014. PMID: 25409831 Free PMC article.

7

Stimulation of the Drosophila immune system alters genome-wide nucleosome occupancy.

Ren Y, Vera DL, Hughes KA, Dennis JH. Ren Y, et al. Genom Data. 2015 Jan 9;3:146-7. doi: 10.1016/j.gdata.2015.01.001. eCollection 2015 Mar. Genom Data. 2015. PMID: 26484165 Free PMC article.

8

Hierarchical regulation of the genome: global changes in nucleosome organization potentiate genome response.

Sexton BS, Druliner BR, Vera DL, Avey D, Zhu F, Dennis JH. Sexton BS, et al. Among authors: vera dl. Oncotarget. 2016 Feb 9;7(6):6460-75. doi: 10.18632/oncotarget.6841. Oncotarget. 2016. PMID: 26771136 Free PMC article.

9

Open chromatin reveals the functional maize genome.

Rodgers-Melnick E, Vera DL, Bass HW, Buckler ES. Rodgers-Melnick E, et al. Proc Natl Acad Sci U S A. 2016 May 31;113(22):E3177-84. doi: 10.1073/pnas.1525244113. Epub 2016 May 16. Proc Natl Acad Sci U S A. 2016. PMID: 27185945 Free PMC article.

10

iSeg: an efficient algorithm for segmentation of genomic and epigenomic data.

Girimurugan SB, Liu Y, Lung PY, Vera DL, Dennis JH, Bass HW, Zhang J. Girimurugan SB, et al. BMC Bioinformatics. 2018 Apr 11;19(1):131. doi: 10.1186/s12859-018-2140-3. BMC Bioinformatics. 2018. PMID: 29642840 Free PMC article.

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