dos Reis M - Search Results

1

Bayesian molecular clock dating of species divergences in the genomics era.

dos Reis M, Donoghue PC, Yang Z. dos Reis M, et al. Nat Rev Genet. 2016 Feb;17(2):71-80. doi: 10.1038/nrg.2015.8. Epub 2015 Dec 21. Nat Rev Genet. 2016. PMID: 26688196 Review.

2

Phylogenomic datasets provide both precision and accuracy in estimating the timescale of placental mammal phylogeny.

dos Reis M, Inoue J, Hasegawa M, Asher RJ, Donoghue PC, Yang Z. dos Reis M, et al. Proc Biol Sci. 2012 Sep 7;279(1742):3491-500. doi: 10.1098/rspb.2012.0683. Epub 2012 May 23. Proc Biol Sci. 2012. PMID: 22628470 Free PMC article.

3

Why do more divergent sequences produce smaller nonsynonymous/synonymous rate ratios in pairwise sequence comparisons?

Dos Reis M, Yang Z. Dos Reis M, et al. Genetics. 2013 Sep;195(1):195-204. doi: 10.1534/genetics.113.152025. Epub 2013 Jun 21. Genetics. 2013. PMID: 23792953 Free PMC article.

4

The impact of the rate prior on Bayesian estimation of divergence times with multiple Loci.

Dos Reis M, Zhu T, Yang Z. Dos Reis M, et al. Syst Biol. 2014 Jul;63(4):555-65. doi: 10.1093/sysbio/syu020. Epub 2014 Mar 21. Syst Biol. 2014. PMID: 24658316 Free PMC article.

5

Characterization of the uncertainty of divergence time estimation under relaxed molecular clock models using multiple loci.

Zhu T, Dos Reis M, Yang Z. Zhu T, et al. Among authors: dos reis m. Syst Biol. 2015 Mar;64(2):267-80. doi: 10.1093/sysbio/syu109. Epub 2014 Dec 11. Syst Biol. 2015. PMID: 25503979 Free PMC article.

6

Dating Tips for Divergence-Time Estimation.

O'Reilly JE, Dos Reis M, Donoghue PCJ. O'Reilly JE, et al. Among authors: dos reis m. Trends Genet. 2015 Nov;31(11):637-650. doi: 10.1016/j.tig.2015.08.001. Epub 2015 Oct 1. Trends Genet. 2015. PMID: 26439502 Review.

7

Constraining uncertainty in the timescale of angiosperm evolution and the veracity of a Cretaceous Terrestrial Revolution.

Barba-Montoya J, Dos Reis M, Schneider H, Donoghue PCJ, Yang Z. Barba-Montoya J, et al. Among authors: dos reis m. New Phytol. 2018 Apr;218(2):819-834. doi: 10.1111/nph.15011. Epub 2018 Feb 5. New Phytol. 2018. PMID: 29399804 Free PMC article.

8

A species-level timeline of mammal evolution integrating phylogenomic data.

Álvarez-Carretero S, Tamuri AU, Battini M, Nascimento FF, Carlisle E, Asher RJ, Yang Z, Donoghue PCJ, Dos Reis M. Álvarez-Carretero S, et al. Among authors: dos reis m. Nature. 2022 Feb;602(7896):263-267. doi: 10.1038/s41586-021-04341-1. Epub 2021 Dec 22. Nature. 2022. PMID: 34937052

9

RelTime Rates Collapse to a Strict Clock When Estimating the Timeline of Animal Diversification.

Lozano-Fernandez J, Dos Reis M, Donoghue PCJ, Pisani D. Lozano-Fernandez J, et al. Among authors: dos reis m. Genome Biol Evol. 2017 May 1;9(5):1320-1328. doi: 10.1093/gbe/evx079. Genome Biol Evol. 2017. PMID: 28449025 Free PMC article.

10

Comparison of different strategies for using fossil calibrations to generate the time prior in Bayesian molecular clock dating.

Barba-Montoya J, Dos Reis M, Yang Z. Barba-Montoya J, et al. Among authors: dos reis m. Mol Phylogenet Evol. 2017 Sep;114:386-400. doi: 10.1016/j.ympev.2017.07.005. Epub 2017 Jul 11. Mol Phylogenet Evol. 2017. PMID: 28709986 Free PMC article.

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