Tsuchiya Y - Search Results

1

Identification of potential inhibitors based on compound proposal contest: Tyrosine-protein kinase Yes as a target.

Chiba S, Ikeda K, Ishida T, Gromiha MM, Taguchi YH, Iwadate M, Umeyama H, Hsin KY, Kitano H, Yamamoto K, Sugaya N, Kato K, Okuno T, Chikenji G, Mochizuki M, Yasuo N, Yoshino R, Yanagisawa K, Ban T, Teramoto R, Ramakrishnan C, Thangakani AM, Velmurugan D, Prathipati P, Ito J, Tsuchiya Y, Mizuguchi K, Honma T, Hirokawa T, Akiyama Y, Sekijima M. Chiba S, et al. Among authors: tsuchiya y. Sci Rep. 2015 Nov 26;5:17209. doi: 10.1038/srep17209. Sci Rep. 2015. PMID: 26607293 Free PMC article.

2

Crystal structure of FtsA from Staphylococcus aureus.

Fujita J, Maeda Y, Nagao C, Tsuchiya Y, Miyazaki Y, Hirose M, Mizohata E, Matsumoto Y, Inoue T, Mizuguchi K, Matsumura H. Fujita J, et al. Among authors: tsuchiya y. FEBS Lett. 2014 May 21;588(10):1879-85. doi: 10.1016/j.febslet.2014.04.008. Epub 2014 Apr 18. FEBS Lett. 2014. PMID: 24746687 Free article.

3

High-resolution modeling of antibody structures by a combination of bioinformatics, expert knowledge, and molecular simulations.

Shirai H, Ikeda K, Yamashita K, Tsuchiya Y, Sarmiento J, Liang S, Morokata T, Mizuguchi K, Higo J, Standley DM, Nakamura H. Shirai H, et al. Among authors: tsuchiya y. Proteins. 2014 Aug;82(8):1624-35. doi: 10.1002/prot.24591. Epub 2014 May 13. Proteins. 2014. PMID: 24756852

4

Kotai Antibody Builder: automated high-resolution structural modeling of antibodies.

Yamashita K, Ikeda K, Amada K, Liang S, Tsuchiya Y, Nakamura H, Shirai H, Standley DM. Yamashita K, et al. Among authors: tsuchiya y. Bioinformatics. 2014 Nov 15;30(22):3279-80. doi: 10.1093/bioinformatics/btu510. Epub 2014 Jul 26. Bioinformatics. 2014. PMID: 25064566

5

Retinoblastoma-binding Protein 4-regulated Classical Nuclear Transport Is Involved in Cellular Senescence.

Tsujii A, Miyamoto Y, Moriyama T, Tsuchiya Y, Obuse C, Mizuguchi K, Oka M, Yoneda Y. Tsujii A, et al. Among authors: tsuchiya y. J Biol Chem. 2015 Dec 4;290(49):29375-88. doi: 10.1074/jbc.M115.681908. Epub 2015 Oct 21. J Biol Chem. 2015. PMID: 26491019 Free PMC article.

6

The diversity of H3 loops determines the antigen-binding tendencies of antibody CDR loops.

Tsuchiya Y, Mizuguchi K. Tsuchiya Y, et al. Protein Sci. 2016 Apr;25(4):815-25. doi: 10.1002/pro.2874. Epub 2016 Jan 20. Protein Sci. 2016. PMID: 26749247 Free PMC article.

7

Ligand-induced Ordering of the C-terminal Tail Primes STING for Phosphorylation by TBK1.

Tsuchiya Y, Jounai N, Takeshita F, Ishii KJ, Mizuguchi K. Tsuchiya Y, et al. EBioMedicine. 2016 Jul;9:87-96. doi: 10.1016/j.ebiom.2016.05.039. Epub 2016 Jun 1. EBioMedicine. 2016. PMID: 27333035 Free PMC article.

8

Actin Cytoskeletal Reorganization Function of JRAB/MICAL-L2 Is Fine-tuned by Intramolecular Interaction between First LIM Zinc Finger and C-terminal Coiled-coil Domains.

Miyake K, Sakane A, Tsuchiya Y, Sagawa I, Tomida Y, Kasahara J, Imoto I, Watanabe S, Higo D, Mizuguchi K, Sasaki T. Miyake K, et al. Among authors: tsuchiya y. Sci Rep. 2019 Sep 5;9(1):12794. doi: 10.1038/s41598-019-49232-8. Sci Rep. 2019. PMID: 31488862 Free PMC article.

9

PoSSuM v.3: A Major Expansion of the PoSSuM Database for Finding Similar Binding Sites of Proteins.

Tsuchiya Y, Yonezawa T, Yamamori Y, Inoura H, Osawa M, Ikeda K, Tomii K. Tsuchiya Y, et al. J Chem Inf Model. 2023 Dec 11;63(23):7578-7587. doi: 10.1021/acs.jcim.3c01405. Epub 2023 Nov 28. J Chem Inf Model. 2023. PMID: 38016694 Free PMC article.

10

Conformational plasticity of JRAB/MICAL-L2 provides "law and order" in collective cell migration.

Sakane A, Yoshizawa S, Nishimura M, Tsuchiya Y, Matsushita N, Miyake K, Horikawa K, Imoto I, Mizuguchi C, Saito H, Ueno T, Matsushita S, Haga H, Deguchi S, Mizuguchi K, Yokota H, Sasaki T. Sakane A, et al. Among authors: tsuchiya y. Mol Biol Cell. 2016 Oct 15;27(20):3095-3108. doi: 10.1091/mbc.E16-05-0332. Epub 2016 Aug 31. Mol Biol Cell. 2016. PMID: 27582384 Free PMC article.

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