D'Souza M - Search Results

1

Lynx: a knowledge base and an analytical workbench for integrative medicine.

Sulakhe D, Xie B, Taylor A, D'Souza M, Balasubramanian S, Hashemifar S, White S, Dave UJ, Agam G, Xu J, Wang S, Gilliam TC, Maltsev N. Sulakhe D, et al. Nucleic Acids Res. 2016 Jan 4;44(D1):D882-7. doi: 10.1093/nar/gkv1257. Epub 2015 Nov 20. Nucleic Acids Res. 2016. PMID: 26590263 Free PMC article.

2

Strategic Integration of Multiple Bioinformatics Resources for System Level Analysis of Biological Networks.

D'Souza M, Sulakhe D, Wang S, Xie B, Hashemifar S, Taylor A, Dubchak I, Conrad Gilliam T, Maltsev N. D'Souza M, et al. Methods Mol Biol. 2017;1613:85-99. doi: 10.1007/978-1-4939-7027-8_5. Methods Mol Biol. 2017. PMID: 28849559

3

PUMA2--grid-based high-throughput analysis of genomes and metabolic pathways.

Maltsev N, Glass E, Sulakhe D, Rodriguez A, Syed MH, Bompada T, Zhang Y, D'Souza M. Maltsev N, et al. Nucleic Acids Res. 2006 Jan 1;34(Database issue):D369-72. doi: 10.1093/nar/gkj095. Nucleic Acids Res. 2006. PMID: 16381888 Free PMC article.

4

Exploring the functional impact of alternative splicing on human protein isoforms using available annotation sources.

Sulakhe D, D'Souza M, Wang S, Balasubramanian S, Athri P, Xie B, Canzar S, Agam G, Gilliam TC, Maltsev N. Sulakhe D, et al. Brief Bioinform. 2019 Sep 27;20(5):1754-1768. doi: 10.1093/bib/bby047. Brief Bioinform. 2019. PMID: 29931155 Free PMC article. Review.

5

SENTRA, a database of signal transduction proteins.

D'Souza M, Romine MF, Maltsev N. D'Souza M, et al. Nucleic Acids Res. 2000 Jan 1;28(1):335-6. doi: 10.1093/nar/28.1.335. Nucleic Acids Res. 2000. PMID: 10592266 Free PMC article.

6

GNARE: automated system for high-throughput genome analysis with grid computational backend.

Sulakhe D, Rodriguez A, D'Souza M, Wilde M, Nefedova V, Foster I, Maltsev N. Sulakhe D, et al. J Clin Monit Comput. 2005 Oct;19(4-5):361-9. doi: 10.1007/s10877-005-3463-y. J Clin Monit Comput. 2005. PMID: 16328950

7

Sentra: a database of signal transduction proteins for comparative genome analysis.

D'Souza M, Glass EM, Syed MH, Zhang Y, Rodriguez A, Maltsev N, Galperin MY. D'Souza M, et al. Nucleic Acids Res. 2007 Jan;35(Database issue):D271-3. doi: 10.1093/nar/gkl949. Epub 2006 Nov 29. Nucleic Acids Res. 2007. PMID: 17135204 Free PMC article.

8

Unique somatic variants in DNA from urine exosomes of individuals with bladder cancer.

Zhou X, Kurywchak P, Wolf-Dennen K, Che SPY, Sulakhe D, D'Souza M, Xie B, Maltsev N, Gilliam TC, Wu CC, McAndrews KM, LeBleu VS, McConkey DJ, Volpert OV, Pretzsch SM, Czerniak BA, Dinney CP, Kalluri R. Zhou X, et al. Mol Ther Methods Clin Dev. 2021 May 29;22:360-376. doi: 10.1016/j.omtm.2021.05.010. eCollection 2021 Sep 10. Mol Ther Methods Clin Dev. 2021. PMID: 34514028 Free PMC article.

9

Using Advanced Bioinformatics Tools to Identify Novel Therapeutic Candidates for Age-Related Macular Degeneration.

Nadeem U, Xie B, Xie EF, D'Souza M, Dao D, Sulakhe D, Skondra D. Nadeem U, et al. Transl Vis Sci Technol. 2022 Aug 1;11(8):10. doi: 10.1167/tvst.11.8.10. Transl Vis Sci Technol. 2022. PMID: 35972434 Free PMC article.

10

Article withdrawn: GNARE: a grid-based server for the analysis of user submitted genomes.

Glass E, Rodriguez A, Romine M, Zhang Y, D'Souza M, Sulakhe D, Syed M, Maltsev N. Glass E, et al. Nucleic Acids Res. 2012 Dec;40(22):e177. doi: 10.1093/nar/gkm366. Epub 2007 May 25. Nucleic Acids Res. 2012. PMID: 17526513 Free PMC article. No abstract available.

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