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TiMEx: a waiting time model for mutually exclusive cancer alterations.
Constantinescu S, Szczurek E, Mohammadi P, Rahnenführer J, Beerenwinkel N. Constantinescu S, et al. Among authors: szczurek e. Bioinformatics. 2016 Apr 1;32(7):968-75. doi: 10.1093/bioinformatics/btv400. Epub 2015 Jul 9. Bioinformatics. 2016. PMID: 26163509
Modeling mutual exclusivity of cancer mutations.
Szczurek E, Beerenwinkel N. Szczurek E, et al. PLoS Comput Biol. 2014 Mar 27;10(3):e1003503. doi: 10.1371/journal.pcbi.1003503. eCollection 2014 Mar. PLoS Comput Biol. 2014. PMID: 24675718 Free PMC article.
Inferring the paths of somatic evolution in cancer.
Misra N, Szczurek E, Vingron M. Misra N, et al. Among authors: szczurek e. Bioinformatics. 2014 Sep 1;30(17):2456-63. doi: 10.1093/bioinformatics/btu319. Epub 2014 May 7. Bioinformatics. 2014. PMID: 24812340
Simultaneous analysis of large-scale RNAi screens for pathogen entry.
Rämö P, Drewek A, Arrieumerlou C, Beerenwinkel N, Ben-Tekaya H, Cardel B, Casanova A, Conde-Alvarez R, Cossart P, Csúcs G, Eicher S, Emmenlauer M, Greber U, Hardt WD, Helenius A, Kasper C, Kaufmann A, Kreibich S, Kühbacher A, Kunszt P, Low SH, Mercer J, Mudrak D, Muntwiler S, Pelkmans L, Pizarro-Cerdá J, Podvinec M, Pujadas E, Rinn B, Rouilly V, Schmich F, Siebourg-Polster J, Snijder B, Stebler M, Studer G, Szczurek E, Truttmann M, von Mering C, Vonderheit A, Yakimovich A, Bühlmann P, Dehio C. Rämö P, et al. Among authors: szczurek e. BMC Genomics. 2014 Dec 22;15(1):1162. doi: 10.1186/1471-2164-15-1162. BMC Genomics. 2014. PMID: 25534632 Free PMC article.
gespeR: a statistical model for deconvoluting off-target-confounded RNA interference screens.
Schmich F, Szczurek E, Kreibich S, Dilling S, Andritschke D, Casanova A, Low SH, Eicher S, Muntwiler S, Emmenlauer M, Rämö P, Conde-Alvarez R, von Mering C, Hardt WD, Dehio C, Beerenwinkel N. Schmich F, et al. Among authors: szczurek e. Genome Biol. 2015 Oct 7;16:220. doi: 10.1186/s13059-015-0783-1. Genome Biol. 2015. PMID: 26445817 Free PMC article.
Erratum to: gespeR: a statistical model for deconvoluting off-target-confounded RNA interference screens.
Schmich F, Szczurek E, Kreibich S, Dilling S, Andritschke D, Casanova A, Low SH, Eicher S, Muntwiler S, Emmenlauer M, Rämo P, Conde-Alvarez R, von Mering C, Hardt WD, Dehio C, Beerenwinkel N. Schmich F, et al. Among authors: szczurek e. Genome Biol. 2015 Oct 21;16:233. doi: 10.1186/s13059-015-0807-x. Genome Biol. 2015. PMID: 26490954 Free PMC article. No abstract available.
Predicting cancer type from tumour DNA signatures.
Soh KP, Szczurek E, Sakoparnig T, Beerenwinkel N. Soh KP, et al. Among authors: szczurek e. Genome Med. 2017 Nov 28;9(1):104. doi: 10.1186/s13073-017-0493-2. Genome Med. 2017. PMID: 29183400 Free PMC article.
Eleven grand challenges in single-cell data science.
Lähnemann D, Köster J, Szczurek E, McCarthy DJ, Hicks SC, Robinson MD, Vallejos CA, Campbell KR, Beerenwinkel N, Mahfouz A, Pinello L, Skums P, Stamatakis A, Attolini CS, Aparicio S, Baaijens J, Balvert M, Barbanson B, Cappuccio A, Corleone G, Dutilh BE, Florescu M, Guryev V, Holmer R, Jahn K, Lobo TJ, Keizer EM, Khatri I, Kielbasa SM, Korbel JO, Kozlov AM, Kuo TH, Lelieveldt BPF, Mandoiu II, Marioni JC, Marschall T, Mölder F, Niknejad A, Rączkowska A, Reinders M, Ridder J, Saliba AE, Somarakis A, Stegle O, Theis FJ, Yang H, Zelikovsky A, McHardy AC, Raphael BJ, Shah SP, Schönhuth A. Lähnemann D, et al. Among authors: szczurek e. Genome Biol. 2020 Feb 7;21(1):31. doi: 10.1186/s13059-020-1926-6. Genome Biol. 2020. PMID: 32033589 Free PMC article. Review.
48 results