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Evolutionary analyses of non-family genes in plants.
Ye CY, Li T, Yin H, Weston DJ, Tuskan GA, Tschaplinski TJ, Yang X. Ye CY, et al. Among authors: yang x. Plant J. 2013 Mar;73(5):788-97. doi: 10.1111/tpj.12073. Epub 2013 Jan 22. Plant J. 2013. PMID: 23145488 Free article.
A roadmap for research on crassulacean acid metabolism (CAM) to enhance sustainable food and bioenergy production in a hotter, drier world.
Yang X, Cushman JC, Borland AM, Edwards EJ, Wullschleger SD, Tuskan GA, Owen NA, Griffiths H, Smith JA, De Paoli HC, Weston DJ, Cottingham R, Hartwell J, Davis SC, Silvera K, Ming R, Schlauch K, Abraham P, Stewart JR, Guo HB, Albion R, Ha J, Lim SD, Wone BW, Yim WC, Garcia T, Mayer JA, Petereit J, Nair SS, Casey E, Hettich RL, Ceusters J, Ranjan P, Palla KJ, Yin H, Reyes-García C, Andrade JL, Freschi L, Beltrán JD, Dever LV, Boxall SF, Waller J, Davies J, Bupphada P, Kadu N, Winter K, Sage RF, Aguilar CN, Schmutz J, Jenkins J, Holtum JA. Yang X, et al. New Phytol. 2015 Aug;207(3):491-504. doi: 10.1111/nph.13393. New Phytol. 2015. PMID: 26153373 Free article. Review.
Transcript, protein and metabolite temporal dynamics in the CAM plant Agave.
Abraham PE, Yin H, Borland AM, Weighill D, Lim SD, De Paoli HC, Engle N, Jones PC, Agh R, Weston DJ, Wullschleger SD, Tschaplinski T, Jacobson D, Cushman JC, Hettich RL, Tuskan GA, Yang X. Abraham PE, et al. Among authors: yang x. Nat Plants. 2016 Nov 21;2:16178. doi: 10.1038/nplants.2016.178. Nat Plants. 2016. PMID: 27869799
The Kalanchoë genome provides insights into convergent evolution and building blocks of crassulacean acid metabolism.
Yang X, Hu R, Yin H, Jenkins J, Shu S, Tang H, Liu D, Weighill DA, Cheol Yim W, Ha J, Heyduk K, Goodstein DM, Guo HB, Moseley RC, Fitzek E, Jawdy S, Zhang Z, Xie M, Hartwell J, Grimwood J, Abraham PE, Mewalal R, Beltrán JD, Boxall SF, Dever LV, Palla KJ, Albion R, Garcia T, Mayer JA, Don Lim S, Man Wai C, Peluso P, Van Buren R, De Paoli HC, Borland AM, Guo H, Chen JG, Muchero W, Yin Y, Jacobson DA, Tschaplinski TJ, Hettich RL, Ming R, Winter K, Leebens-Mack JH, Smith JAC, Cushman JC, Schmutz J, Tuskan GA. Yang X, et al. Nat Commun. 2017 Dec 1;8(1):1899. doi: 10.1038/s41467-017-01491-7. Nat Commun. 2017. PMID: 29196618 Free PMC article.
Working towards recalcitrance mechanisms: increased xylan and homogalacturonan production by overexpression of GAlactUronosylTransferase12 (GAUT12) causes increased recalcitrance and decreased growth in Populus.
Biswal AK, Atmodjo MA, Pattathil S, Amos RA, Yang X, Winkeler K, Collins C, Mohanty SS, Ryno D, Tan L, Gelineo-Albersheim I, Hunt K, Sykes RW, Turner GB, Ziebell A, Davis MF, Decker SR, Hahn MG, Mohnen D. Biswal AK, et al. Among authors: yang x. Biotechnol Biofuels. 2018 Jan 17;11:9. doi: 10.1186/s13068-017-1002-y. eCollection 2018. Biotechnol Biofuels. 2018. PMID: 29371885 Free PMC article.
Sugar release and growth of biofuel crops are improved by downregulation of pectin biosynthesis.
Biswal AK, Atmodjo MA, Li M, Baxter HL, Yoo CG, Pu Y, Lee YC, Mazarei M, Black IM, Zhang JY, Ramanna H, Bray AL, King ZR, LaFayette PR, Pattathil S, Donohoe BS, Mohanty SS, Ryno D, Yee K, Thompson OA, Rodriguez M Jr, Dumitrache A, Natzke J, Winkeler K, Collins C, Yang X, Tan L, Sykes RW, Gjersing EL, Ziebell A, Turner GB, Decker SR, Hahn MG, Davison BH, Udvardi MK, Mielenz JR, Davis MF, Nelson RS, Parrott WA, Ragauskas AJ, Neal Stewart C Jr, Mohnen D. Biswal AK, et al. Among authors: yang x. Nat Biotechnol. 2018 Mar;36(3):249-257. doi: 10.1038/nbt.4067. Epub 2018 Feb 12. Nat Biotechnol. 2018. PMID: 29431741
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