Chiarugi D - Search Results

1

Modelling non-Markovian dynamics in biochemical reactions.

Chiarugi D, Falaschi M, Hermith D, Olarte C, Torella L. Chiarugi D, et al. BMC Syst Biol. 2015;9 Suppl 3(Suppl 3):S8. doi: 10.1186/1752-0509-9-S3-S8. Epub 2015 Jun 1. BMC Syst Biol. 2015. PMID: 26051249 Free PMC article.

2

On deducing causality in metabolic networks.

Bodei C, Bracciali A, Chiarugi D. Bodei C, et al. Among authors: chiarugi d. BMC Bioinformatics. 2008 Apr 25;9 Suppl 4(Suppl 4):S8. doi: 10.1186/1471-2105-9-S4-S8. BMC Bioinformatics. 2008. PMID: 18460181 Free PMC article.

3

A renewal model for the emergence of anomalous solute crowding in liposomes.

Paradisi P, Allegrini P, Chiarugi D. Paradisi P, et al. Among authors: chiarugi d. BMC Syst Biol. 2015;9 Suppl 3(Suppl 3):S7. doi: 10.1186/1752-0509-9-S3-S7. Epub 2015 Jun 1. BMC Syst Biol. 2015. PMID: 26051120 Free PMC article.

4

Single-molecule modeling of mRNA degradation by miRNA: Lessons from data.

Sin C, Chiarugi D, Valleriani A. Sin C, et al. Among authors: chiarugi d. BMC Syst Biol. 2015;9 Suppl 3(Suppl 3):S2. doi: 10.1186/1752-0509-9-S3-S2. Epub 2015 Jun 1. BMC Syst Biol. 2015. PMID: 26050661 Free PMC article.

5

On the impact of discreteness and abstractions on modelling noise in gene regulatory networks.

Bodei C, Bortolussi L, Chiarugi D, Guerriero ML, Policriti A, Romanel A. Bodei C, et al. Among authors: chiarugi d. Comput Biol Chem. 2015 Jun;56:98-108. doi: 10.1016/j.compbiolchem.2015.04.004. Epub 2015 Apr 8. Comput Biol Chem. 2015. PMID: 25909953

6

A computational approach to the functional screening of genomes.

Chiarugi D, Degano P, Marangoni R. Chiarugi D, et al. PLoS Comput Biol. 2007 Sep;3(9):1801-6. doi: 10.1371/journal.pcbi.0030174. Epub 2007 Jul 26. PLoS Comput Biol. 2007. PMID: 17907794 Free PMC article.

7

Degradation Parameters from Pulse-Chase Experiments.

Sin C, Chiarugi D, Valleriani A. Sin C, et al. Among authors: chiarugi d. PLoS One. 2016 May 16;11(5):e0155028. doi: 10.1371/journal.pone.0155028. eCollection 2016. PLoS One. 2016. PMID: 27182698 Free PMC article.

8

Quantitative assessment of ribosome drop-off in E. coli.

Sin C, Chiarugi D, Valleriani A. Sin C, et al. Among authors: chiarugi d. Nucleic Acids Res. 2016 Apr 7;44(6):2528-37. doi: 10.1093/nar/gkw137. Epub 2016 Mar 1. Nucleic Acids Res. 2016. PMID: 26935582 Free PMC article.

9

Weak correlation of starch and volume in synchronized photosynthetic cells.

Rading MM, Sandmann M, Steup M, Chiarugi D, Valleriani A. Rading MM, et al. Among authors: chiarugi d. Phys Rev E Stat Nonlin Soft Matter Phys. 2015 Jan;91(1):012711. doi: 10.1103/PhysRevE.91.012711. Epub 2015 Jan 28. Phys Rev E Stat Nonlin Soft Matter Phys. 2015. PMID: 25679646

10

A data-driven estimation of the ribosome drop-off rate in S. cerevisiae reveals a correlation with the genes length.

Awad S, Valleriani A, Chiarugi D. Awad S, et al. Among authors: chiarugi d. NAR Genom Bioinform. 2024 Apr 18;6(2):lqae036. doi: 10.1093/nargab/lqae036. eCollection 2024 Jun. NAR Genom Bioinform. 2024. PMID: 38638702 Free PMC article.

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