McCarthy J - Search Results

1

An integrative analysis of post-translational histone modifications in the marine diatom Phaeodactylum tricornutum.

Veluchamy A, Rastogi A, Lin X, Lombard B, Murik O, Thomas Y, Dingli F, Rivarola M, Ott S, Liu X, Sun Y, Rabinowicz PD, McCarthy J, Allen AE, Loew D, Bowler C, Tirichine L. Veluchamy A, et al. Among authors: mccarthy j. Genome Biol. 2015 May 20;16(1):102. doi: 10.1186/s13059-015-0671-8. Genome Biol. 2015. PMID: 25990474 Free PMC article.

2

Integrative analysis of large scale transcriptome data draws a comprehensive landscape of Phaeodactylum tricornutum genome and evolutionary origin of diatoms.

Rastogi A, Maheswari U, Dorrell RG, Vieira FRJ, Maumus F, Kustka A, McCarthy J, Allen AE, Kersey P, Bowler C, Tirichine L. Rastogi A, et al. Among authors: mccarthy j. Sci Rep. 2018 Mar 19;8(1):4834. doi: 10.1038/s41598-018-23106-x. Sci Rep. 2018. PMID: 29556065 Free PMC article.

3

The Importance of Protein Phosphorylation for Signaling and Metabolism in Response to Diel Light Cycling and Nutrient Availability in a Marine Diatom.

Tan MH, Smith SR, Hixson KK, Tan J, McCarthy JK, Kustka AB, Allen AE. Tan MH, et al. Among authors: mccarthy jk. Biology (Basel). 2020 Jul 6;9(7):155. doi: 10.3390/biology9070155. Biology (Basel). 2020. PMID: 32640597 Free PMC article.

4

Nitrate Reductase Knockout Uncouples Nitrate Transport from Nitrate Assimilation and Drives Repartitioning of Carbon Flux in a Model Pennate Diatom.

McCarthy JK, Smith SR, McCrow JP, Tan M, Zheng H, Beeri K, Roth R, Lichtle C, Goodenough U, Bowler CP, Dupont CL, Allen AE. McCarthy JK, et al. Plant Cell. 2017 Aug;29(8):2047-2070. doi: 10.1105/tpc.16.00910. Epub 2017 Aug 1. Plant Cell. 2017. PMID: 28765511 Free PMC article.

5

Inactivation of Phaeodactylum tricornutum urease gene using transcription activator-like effector nuclease-based targeted mutagenesis.

Weyman PD, Beeri K, Lefebvre SC, Rivera J, McCarthy JK, Heuberger AL, Peers G, Allen AE, Dupont CL. Weyman PD, et al. Among authors: mccarthy jk. Plant Biotechnol J. 2015 May;13(4):460-70. doi: 10.1111/pbi.12254. Epub 2014 Oct 10. Plant Biotechnol J. 2015. PMID: 25302562 Free article.

6

Multiplexed Knockouts in the Model Diatom Phaeodactylum by Episomal Delivery of a Selectable Cas9.

Moosburner MA, Gholami P, McCarthy JK, Tan M, Bielinski VA, Allen AE. Moosburner MA, et al. Front Microbiol. 2020 Jan 28;11:5. doi: 10.3389/fmicb.2020.00005. eCollection 2020. Front Microbiol. 2020. PMID: 32047486 Free PMC article.

7

Evolution and regulation of nitrogen flux through compartmentalized metabolic networks in a marine diatom.

Smith SR, Dupont CL, McCarthy JK, Broddrick JT, Oborník M, Horák A, Füssy Z, Cihlář J, Kleessen S, Zheng H, McCrow JP, Hixson KK, Araújo WL, Nunes-Nesi A, Fernie A, Nikoloski Z, Palsson BO, Allen AE. Smith SR, et al. Among authors: mccarthy jk. Nat Commun. 2019 Oct 7;10(1):4552. doi: 10.1038/s41467-019-12407-y. Nat Commun. 2019. PMID: 31591397 Free PMC article.

8

Endogenous green fluorescent protein (GFP) in amphioxus.

Deheyn DD, Kubokawa K, McCarthy JK, Murakami A, Porrachia M, Rouse GW, Holland ND. Deheyn DD, et al. Biol Bull. 2007 Oct;213(2):95-100. doi: 10.2307/25066625. Biol Bull. 2007. PMID: 17928516 No abstract available.

9

Using single nuclei for RNA-seq to capture the transcriptome of postmortem neurons.

Krishnaswami SR, Grindberg RV, Novotny M, Venepally P, Lacar B, Bhutani K, Linker SB, Pham S, Erwin JA, Miller JA, Hodge R, McCarthy JK, Kelder M, McCorrison J, Aevermann BD, Fuertes FD, Scheuermann RH, Lee J, Lein ES, Schork N, McConnell MJ, Gage FH, Lasken RS. Krishnaswami SR, et al. Among authors: mccarthy jk. Nat Protoc. 2016 Mar;11(3):499-524. doi: 10.1038/nprot.2016.015. Epub 2016 Feb 18. Nat Protoc. 2016. PMID: 26890679 Free PMC article.

10

Climate change contributions to future atmospheric river flood damages in the western United States.

Corringham TW, McCarthy J, Shulgina T, Gershunov A, Cayan DR, Ralph FM. Corringham TW, et al. Among authors: mccarthy j. Sci Rep. 2022 Aug 12;12(1):13747. doi: 10.1038/s41598-022-15474-2. Sci Rep. 2022. PMID: 35961991 Free PMC article.

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