Bar-Joseph Z - Search Results

1

cDREM: inferring dynamic combinatorial gene regulation.

Wise A, Bar-Joseph Z. Wise A, et al. J Comput Biol. 2015 Apr;22(4):324-33. doi: 10.1089/cmb.2015.0010. J Comput Biol. 2015. PMID: 25844671 Free PMC article.

2

Reconstructing dynamic regulatory maps.

Ernst J, Vainas O, Harbison CT, Simon I, Bar-Joseph Z. Ernst J, et al. Mol Syst Biol. 2007;3:74. doi: 10.1038/msb4100115. Epub 2007 Jan 16. Mol Syst Biol. 2007. PMID: 17224918 Free PMC article.

3

A patient-gene model for temporal expression profiles in clinical studies.

Kaminski N, Bar-Joseph Z. Kaminski N, et al. J Comput Biol. 2007 Apr;14(3):324-38. doi: 10.1089/cmb.2007.0001. J Comput Biol. 2007. PMID: 17563314

4

A semi-supervised method for predicting transcription factor-gene interactions in Escherichia coli.

Ernst J, Beg QK, Kay KA, Balázsi G, Oltvai ZN, Bar-Joseph Z. Ernst J, et al. PLoS Comput Biol. 2008 Mar 28;4(3):e1000044. doi: 10.1371/journal.pcbi.1000044. PLoS Comput Biol. 2008. PMID: 18369434 Free PMC article.

5

Extracting dynamics from static cancer expression data.

Gupta A, Bar-Joseph Z. Gupta A, et al. IEEE/ACM Trans Comput Biol Bioinform. 2008 Apr-Jun;5(2):172-82. doi: 10.1109/TCBB.2007.70233. IEEE/ACM Trans Comput Biol Bioinform. 2008. PMID: 18451427

6

Backup in gene regulatory networks explains differences between binding and knockout results.

Gitter A, Siegfried Z, Klutstein M, Fornes O, Oliva B, Simon I, Bar-Joseph Z. Gitter A, et al. Mol Syst Biol. 2009;5:276. doi: 10.1038/msb.2009.33. Epub 2009 Jun 16. Mol Syst Biol. 2009. PMID: 19536199 Free PMC article.

7

A combined expression-interaction model for inferring the temporal activity of transcription factors.

Shi Y, Klutstein M, Simon I, Mitchell T, Bar-Joseph Z. Shi Y, et al. J Comput Biol. 2009 Aug;16(8):1035-49. doi: 10.1089/cmb.2009.0024. J Comput Biol. 2009. PMID: 19630541 Free PMC article.

8

Cross species expression analysis of innate immune response.

Lu Y, Rosenfeld R, Nau GJ, Bar-Joseph Z. Lu Y, et al. J Comput Biol. 2010 Mar;17(3):253-68. doi: 10.1089/cmb.2009.0147. J Comput Biol. 2010. PMID: 20377444 Free PMC article.

9

Computational methods for analyzing dynamic regulatory networks.

Gitter A, Lu Y, Bar-Joseph Z. Gitter A, et al. Methods Mol Biol. 2010;674:419-41. doi: 10.1007/978-1-60761-854-6_24. Methods Mol Biol. 2010. PMID: 20827605 Free PMC article. Review.

10

Learning cellular sorting pathways using protein interactions and sequence motifs.

Lin TH, Bar-Joseph Z, Murphy RF. Lin TH, et al. J Comput Biol. 2011 Nov;18(11):1709-22. doi: 10.1089/cmb.2011.0193. Epub 2011 Oct 14. J Comput Biol. 2011. PMID: 21999284 Free PMC article.

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