Kim DS - Search Results

1

Optimal ligand descriptor for pocket recognition based on the Beta-shape.

Kim JK, Won CI, Cha J, Lee K, Kim DS. Kim JK, et al. Among authors: kim ds. PLoS One. 2015 Apr 2;10(4):e0122787. doi: 10.1371/journal.pone.0122787. eCollection 2015. PLoS One. 2015. PMID: 25835497 Free PMC article.

2

Pocket extraction on proteins via the Voronoi diagram of spheres.

Kim D, Cho CH, Cho Y, Ryu J, Bhak J, Kim DS. Kim D, et al. Among authors: kim ds. J Mol Graph Model. 2008 Apr;26(7):1104-12. doi: 10.1016/j.jmgm.2007.10.002. Epub 2007 Oct 7. J Mol Graph Model. 2008. PMID: 18023220

3

Innovative platform for transmission localized surface plasmon transducers and its application in detecting heavy metal Pd(II).

Gao S, Koshizaki N, Koyama E, Tokuhisa H, Sasaki T, Kim JK, Cho Y, Kim DS, Shimizu Y. Gao S, et al. Among authors: kim ds, kim jk. Anal Chem. 2009 Sep 15;81(18):7703-12. doi: 10.1021/ac901137z. Anal Chem. 2009. PMID: 19697928

4

Sphericity of a protein via the beta-complex.

Kim DS, Kim JK, Won CI, Kim CM, Park JY, Bhak J. Kim DS, et al. Among authors: kim jk, kim cm. J Mol Graph Model. 2010 Apr;28(7):636-49. doi: 10.1016/j.jmgm.2010.01.001. Epub 2010 Jan 15. J Mol Graph Model. 2010. PMID: 20129805

5

A proposal for the revision of molecular boundary typology.

Kim DS, Won CI, Bhak J. Kim DS, et al. J Biomol Struct Dyn. 2010 Oct;28(2):277-88. doi: 10.1080/07391102.2010.10507359. J Biomol Struct Dyn. 2010. PMID: 20645659

6

BetaDock: shape-priority docking method based on beta-complex.

Kim DS, Kim CM, Won CI, Kim JK, Ryu J, Cho Y, Lee C, Bhak J. Kim DS, et al. Among authors: kim jk, kim cm. J Biomol Struct Dyn. 2011 Aug;29(1):219-42. doi: 10.1080/07391102.2011.10507384. J Biomol Struct Dyn. 2011. PMID: 21696235

7

BetaSuperposer: superposition of protein surfaces using beta-shapes.

Kim JK, Kim DS. Kim JK, et al. Among authors: kim ds. J Biomol Struct Dyn. 2012;30(6):684-700. doi: 10.1080/07391102.2012.689700. Epub 2012 Jul 19. J Biomol Struct Dyn. 2012. PMID: 22812415

8

A beta-complex statistical four body contact potential combined with a hydrogen bond statistical potential recognizes the correct native structure from protein decoy sets.

Sánchez-González G, Kim JK, Kim DS, Garduño-Juárez R. Sánchez-González G, et al. Among authors: kim ds, kim jk. Proteins. 2013 Aug;81(8):1420-33. doi: 10.1002/prot.24293. Epub 2013 Jun 1. Proteins. 2013. PMID: 23568277

9

GalaxyDock2: protein-ligand docking using beta-complex and global optimization.

Shin WH, Kim JK, Kim DS, Seok C. Shin WH, et al. Among authors: kim ds, kim jk. J Comput Chem. 2013 Nov 15;34(30):2647-56. doi: 10.1002/jcc.23438. Epub 2013 Sep 24. J Comput Chem. 2013. PMID: 24108416

10

BetaVoid: molecular voids via beta-complexes and Voronoi diagrams.

Kim JK, Cho Y, Laskowski RA, Ryu SE, Sugihara K, Kim DS. Kim JK, et al. Among authors: kim ds. Proteins. 2014 Sep;82(9):1829-49. doi: 10.1002/prot.24537. Epub 2014 Mar 20. Proteins. 2014. PMID: 24677176

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