Stoddard BL - Search Results

1

Computational protein design enables a novel one-carbon assimilation pathway.

Siegel JB, Smith AL, Poust S, Wargacki AJ, Bar-Even A, Louw C, Shen BW, Eiben CB, Tran HM, Noor E, Gallaher JL, Bale J, Yoshikuni Y, Gelb MH, Keasling JD, Stoddard BL, Lidstrom ME, Baker D. Siegel JB, et al. Among authors: stoddard bl. Proc Natl Acad Sci U S A. 2015 Mar 24;112(12):3704-9. doi: 10.1073/pnas.1500545112. Epub 2015 Mar 9. Proc Natl Acad Sci U S A. 2015. PMID: 25775555 Free PMC article.

2

Molecular recognition analyzed by docking simulations: the aspartate receptor and isocitrate dehydrogenase from Escherichia coli.

Stoddard BL, Koshland DE Jr. Stoddard BL, et al. Proc Natl Acad Sci U S A. 1993 Feb 15;90(4):1146-53. doi: 10.1073/pnas.90.4.1146. Proc Natl Acad Sci U S A. 1993. PMID: 8433976 Free PMC article.

3

1,3-Dioxane-4,6-dione-5-carboxamide-based inhibitors of human group IIA phospholipase A: X-ray structure of the complex and interfacial selection of inhibitors from a structural library.

Bryant MD, Flick KE, Koduri RS, Wilton DC, Stoddard BL, Gelb MH. Bryant MD, et al. Among authors: stoddard bl. Bioorg Med Chem Lett. 1999 Apr 19;9(8):1097-102. doi: 10.1016/s0960-894x(99)00147-x. Bioorg Med Chem Lett. 1999. PMID: 10328292

4

The crystal structure of a bacterial, bifunctional 5,10 methylene-tetrahydrofolate dehydrogenase/cyclohydrolase.

Shen BW, Dyer DH, Huang JY, D'Ari L, Rabinowitz J, Stoddard BL. Shen BW, et al. Among authors: stoddard bl. Protein Sci. 1999 Jun;8(6):1342-9. doi: 10.1110/ps.8.6.1342. Protein Sci. 1999. PMID: 10386884 Free PMC article.

5

Structure of the C2 domain of human factor VIII at 1.5 A resolution.

Pratt KP, Shen BW, Takeshima K, Davie EW, Fujikawa K, Stoddard BL. Pratt KP, et al. Among authors: stoddard bl. Nature. 1999 Nov 25;402(6760):439-42. doi: 10.1038/46601. Nature. 1999. PMID: 10586887

6

Design, activity, and structure of a highly specific artificial endonuclease.

Chevalier BS, Kortemme T, Chadsey MS, Baker D, Monnat RJ, Stoddard BL. Chevalier BS, et al. Among authors: stoddard bl. Mol Cell. 2002 Oct;10(4):895-905. doi: 10.1016/s1097-2765(02)00690-1. Mol Cell. 2002. PMID: 12419232 Free article.

7

The crystal structure and mutational analysis of human NUDT9.

Shen BW, Perraud AL, Scharenberg A, Stoddard BL. Shen BW, et al. Among authors: stoddard bl. J Mol Biol. 2003 Sep 12;332(2):385-98. doi: 10.1016/s0022-2836(03)00954-9. J Mol Biol. 2003. PMID: 12948489

8

Design of a novel globular protein fold with atomic-level accuracy.

Kuhlman B, Dantas G, Ireton GC, Varani G, Stoddard BL, Baker D. Kuhlman B, et al. Among authors: stoddard bl. Science. 2003 Nov 21;302(5649):1364-8. doi: 10.1126/science.1089427. Science. 2003. PMID: 14631033

9

Computational redesign of protein-protein interaction specificity.

Kortemme T, Joachimiak LA, Bullock AN, Schuler AD, Stoddard BL, Baker D. Kortemme T, et al. Among authors: stoddard bl. Nat Struct Mol Biol. 2004 Apr;11(4):371-9. doi: 10.1038/nsmb749. Epub 2004 Mar 21. Nat Struct Mol Biol. 2004. PMID: 15034550

10

DNA binding and cleavage by the HNH homing endonuclease I-HmuI.

Shen BW, Landthaler M, Shub DA, Stoddard BL. Shen BW, et al. Among authors: stoddard bl. J Mol Biol. 2004 Sep 3;342(1):43-56. doi: 10.1016/j.jmb.2004.07.032. J Mol Biol. 2004. PMID: 15313606

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