Vineis JH - Search Results

1

Sewage reflects the microbiomes of human populations.

Newton RJ, McLellan SL, Dila DK, Vineis JH, Morrison HG, Eren AM, Sogin ML. Newton RJ, et al. Among authors: vineis jh. mBio. 2015 Feb 24;6(2):e02574. doi: 10.1128/mBio.02574-14. mBio. 2015. PMID: 25714718 Free PMC article.

2

A filtering method to generate high quality short reads using illumina paired-end technology.

Eren AM, Vineis JH, Morrison HG, Sogin ML. Eren AM, et al. Among authors: vineis jh. PLoS One. 2013 Jun 17;8(6):e66643. doi: 10.1371/journal.pone.0066643. Print 2013. PLoS One. 2013. PMID: 23799126 Free PMC article.

3

Multiphasic analysis of the temporal development of the distal gut microbiota in patients following ileal pouch anal anastomosis.

Young VB, Raffals LH, Huse SM, Vital M, Dai D, Schloss PD, Brulc JM, Antonopoulos DA, Arrieta RL, Kwon JH, Reddy KG, Hubert NA, Grim SL, Vineis JH, Dalal S, Morrison HG, Eren AM, Meyer F, Schmidt TM, Tiedje JM, Chang EB, Sogin ML. Young VB, et al. Among authors: vineis jh. Microbiome. 2013 Mar 4;1(1):9. doi: 10.1186/2049-2618-1-9. Microbiome. 2013. PMID: 24451366 Free PMC article.

4

Comparison of brush and biopsy sampling methods of the ileal pouch for assessment of mucosa-associated microbiota of human subjects.

Huse SM, Young VB, Morrison HG, Antonopoulos DA, Kwon J, Dalal S, Arrieta R, Hubert NA, Shen L, Vineis JH, Koval JC, Sogin ML, Chang EB, Raffals LE. Huse SM, et al. Among authors: vineis jh. Microbiome. 2014 Feb 14;2(1):5. doi: 10.1186/2049-2618-2-5. Microbiome. 2014. PMID: 24529162 Free PMC article.

5

A single genus in the gut microbiome reflects host preference and specificity.

Eren AM, Sogin ML, Morrison HG, Vineis JH, Fisher JC, Newton RJ, McLellan SL. Eren AM, et al. Among authors: vineis jh. ISME J. 2015 Jan;9(1):90-100. doi: 10.1038/ismej.2014.97. Epub 2014 Jun 17. ISME J. 2015. PMID: 24936765 Free PMC article.

6

Minimum entropy decomposition: unsupervised oligotyping for sensitive partitioning of high-throughput marker gene sequences.

Eren AM, Morrison HG, Lescault PJ, Reveillaud J, Vineis JH, Sogin ML. Eren AM, et al. Among authors: vineis jh. ISME J. 2015 Mar 17;9(4):968-79. doi: 10.1038/ismej.2014.195. ISME J. 2015. PMID: 25325381 Free PMC article.

7

Comparison of Sewage and Animal Fecal Microbiomes by Using Oligotyping Reveals Potential Human Fecal Indicators in Multiple Taxonomic Groups.

Fisher JC, Eren AM, Green HC, Shanks OC, Morrison HG, Vineis JH, Sogin ML, McLellan SL. Fisher JC, et al. Among authors: vineis jh. Appl Environ Microbiol. 2015 Oct;81(20):7023-33. doi: 10.1128/AEM.01524-15. Epub 2015 Jul 31. Appl Environ Microbiol. 2015. PMID: 26231648 Free PMC article.

8

Anvi'o: an advanced analysis and visualization platform for 'omics data.

Eren AM, Esen ÖC, Quince C, Vineis JH, Morrison HG, Sogin ML, Delmont TO. Eren AM, et al. Among authors: vineis jh. PeerJ. 2015 Oct 8;3:e1319. doi: 10.7717/peerj.1319. eCollection 2015. PeerJ. 2015. PMID: 26500826 Free PMC article.

9

Genome reconstructions indicate the partitioning of ecological functions inside a phytoplankton bloom in the Amundsen Sea, Antarctica.

Delmont TO, Eren AM, Vineis JH, Post AF. Delmont TO, et al. Among authors: vineis jh. Front Microbiol. 2015 Oct 26;6:1090. doi: 10.3389/fmicb.2015.01090. eCollection 2015. Front Microbiol. 2015. PMID: 26579075 Free PMC article.

10

Patient-Specific Bacteroides Genome Variants in Pouchitis.

Vineis JH, Ringus DL, Morrison HG, Delmont TO, Dalal S, Raffals LH, Antonopoulos DA, Rubin DT, Eren AM, Chang EB, Sogin ML. Vineis JH, et al. mBio. 2016 Nov 15;7(6):e01713-16. doi: 10.1128/mBio.01713-16. mBio. 2016. PMID: 27935837 Free PMC article.

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