Zhu A - Search Results

1

CHARMM-GUI PDB manipulator for advanced modeling and simulations of proteins containing nonstandard residues.

Jo S, Cheng X, Islam SM, Huang L, Rui H, Zhu A, Lee HS, Qi Y, Han W, Vanommeslaeghe K, MacKerell AD Jr, Roux B, Im W. Jo S, et al. Among authors: zhu a. Adv Protein Chem Struct Biol. 2014;96:235-65. doi: 10.1016/bs.apcsb.2014.06.002. Epub 2014 Aug 24. Adv Protein Chem Struct Biol. 2014. PMID: 25443960 Free PMC article. Review.

2

RADAR: differential analysis of MeRIP-seq data with a random effect model.

Zhang Z, Zhan Q, Eckert M, Zhu A, Chryplewicz A, De Jesus DF, Ren D, Kulkarni RN, Lengyel E, He C, Chen M. Zhang Z, et al. Among authors: zhu a. Genome Biol. 2019 Dec 23;20(1):294. doi: 10.1186/s13059-019-1915-9. Genome Biol. 2019. PMID: 31870409 Free PMC article.

3

The RNA-binding protein FMRP facilitates the nuclear export of N⁶-methyladenosine-containing mRNAs.

Hsu PJ, Shi H, Zhu AC, Lu Z, Miller N, Edens BM, Ma YC, He C. Hsu PJ, et al. J Biol Chem. 2019 Dec 27;294(52):19889-19895. doi: 10.1074/jbc.AC119.010078. Epub 2019 Nov 21. J Biol Chem. 2019. PMID: 31753916 Free PMC article.

4

The METTL5-TRMT112 N⁶-methyladenosine methyltransferase complex regulates mRNA translation via 18S rRNA methylation.

Sepich-Poore C, Zheng Z, Schmitt E, Wen K, Zhang ZS, Cui XL, Dai Q, Zhu AC, Zhang L, Sanchez Castillo A, Tan H, Peng J, Zhuang X, He C, Nachtergaele S. Sepich-Poore C, et al. Among authors: zhu ac. J Biol Chem. 2022 Mar;298(3):101590. doi: 10.1016/j.jbc.2022.101590. Epub 2022 Jan 14. J Biol Chem. 2022. PMID: 35033535 Free PMC article.

5

REPIC: a database for exploring the N⁶-methyladenosine methylome.

Liu S, Zhu A, He C, Chen M. Liu S, et al. Among authors: zhu a. Genome Biol. 2020 Apr 28;21(1):100. doi: 10.1186/s13059-020-02012-4. Genome Biol. 2020. PMID: 32345346 Free PMC article.

6

Global Detection of RNA Methylation by Click Degradation.

Zhu AC, He C. Zhu AC, et al. ACS Cent Sci. 2020 Dec 23;6(12):2126-2129. doi: 10.1021/acscentsci.0c01449. Epub 2020 Nov 11. ACS Cent Sci. 2020. PMID: 33376774 Free PMC article. No abstract available.

7

Stabilization of ERK-Phosphorylated METTL3 by USP5 Increases m⁶A Methylation.

Sun HL, Zhu AC, Gao Y, Terajima H, Fei Q, Liu S, Zhang L, Zhang Z, Harada BT, He YY, Bissonnette MB, Hung MC, He C. Sun HL, et al. Mol Cell. 2020 Nov 19;80(4):633-647.e7. doi: 10.1016/j.molcel.2020.10.026. Mol Cell. 2020. PMID: 33217317 Free PMC article.

8

N⁶-Deoxyadenosine Methylation in Mammalian Mitochondrial DNA.

Hao Z, Wu T, Cui X, Zhu P, Tan C, Dou X, Hsu KW, Lin YT, Peng PH, Zhang LS, Gao Y, Hu L, Sun HL, Zhu A, Liu J, Wu KJ, He C. Hao Z, et al. Among authors: zhu a, zhu p. Mol Cell. 2020 May 7;78(3):382-395.e8. doi: 10.1016/j.molcel.2020.02.018. Epub 2020 Mar 16. Mol Cell. 2020. PMID: 32183942 Free PMC article.

9

METTL3 Regulates Liver Homeostasis, Hepatocyte Ploidy, and Circadian Rhythm-Controlled Gene Expression in Mice.

Barajas JM, Lin CH, Sun HL, Alencastro F, Zhu AC, Aljuhani M, Navari L, Yilmaz SA, Yu L, Corps K, He C, Duncan AW, Ghoshal K. Barajas JM, et al. Among authors: zhu ac. Am J Pathol. 2022 Jan;192(1):56-71. doi: 10.1016/j.ajpath.2021.09.005. Epub 2021 Sep 29. Am J Pathol. 2022. PMID: 34599880 Free PMC article.

10

RBM33 is a unique m⁶A RNA-binding protein that regulates ALKBH5 demethylase activity and substrate selectivity.

Yu F, Zhu AC, Liu S, Gao B, Wang Y, Khudaverdyan N, Yu C, Wu Q, Jiang Y, Song J, Jin L, He C, Qian Z. Yu F, et al. Mol Cell. 2023 Jun 15;83(12):2003-2019.e6. doi: 10.1016/j.molcel.2023.05.010. Epub 2023 May 30. Mol Cell. 2023. PMID: 37257451

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