Helmer-Citterich M - Search Results

1

AMBRA1 links autophagy to cell proliferation and tumorigenesis by promoting c-Myc dephosphorylation and degradation.

Cianfanelli V, Fuoco C, Lorente M, Salazar M, Quondamatteo F, Gherardini PF, De Zio D, Nazio F, Antonioli M, D'Orazio M, Skobo T, Bordi M, Rohde M, Dalla Valle L, Helmer-Citterich M, Gretzmeier C, Dengjel J, Fimia GM, Piacentini M, Di Bartolomeo S, Velasco G, Cecconi F. Cianfanelli V, et al. Nat Cell Biol. 2015 Jan;17(1):20-30. doi: 10.1038/ncb3072. Epub 2014 Dec 1. Nat Cell Biol. 2015. PMID: 25438055 Free PMC article.

2

Phospho3D: a database of three-dimensional structures of protein phosphorylation sites.

Zanzoni A, Ausiello G, Via A, Gherardini PF, Helmer-Citterich M. Zanzoni A, et al. Nucleic Acids Res. 2007 Jan;35(Database issue):D229-31. doi: 10.1093/nar/gkl922. Epub 2006 Nov 16. Nucleic Acids Res. 2007. PMID: 17142231 Free PMC article.

3

False occurrences of functional motifs in protein sequences highlight evolutionary constraints.

Via A, Gherardini PF, Ferraro E, Ausiello G, Scalia Tomba G, Helmer-Citterich M. Via A, et al. BMC Bioinformatics. 2007 Mar 1;8:68. doi: 10.1186/1471-2105-8-68. BMC Bioinformatics. 2007. PMID: 17331242 Free PMC article.

4

3dLOGO: a web server for the identification, analysis and use of conserved protein substructures.

Via A, Peluso D, Gherardini PF, de Rinaldis E, Colombo T, Ausiello G, Helmer-Citterich M. Via A, et al. Nucleic Acids Res. 2007 Jul;35(Web Server issue):W416-9. doi: 10.1093/nar/gkm228. Epub 2007 May 8. Nucleic Acids Res. 2007. PMID: 17488847 Free PMC article.

5

Convergent evolution of enzyme active sites is not a rare phenomenon.

Gherardini PF, Wass MN, Helmer-Citterich M, Sternberg MJ. Gherardini PF, et al. J Mol Biol. 2007 Sep 21;372(3):817-45. doi: 10.1016/j.jmb.2007.06.017. Epub 2007 Jun 14. J Mol Biol. 2007. PMID: 17681532

6

FunClust: a web server for the identification of structural motifs in a set of non-homologous protein structures.

Ausiello G, Gherardini PF, Marcatili P, Tramontano A, Via A, Helmer-Citterich M. Ausiello G, et al. BMC Bioinformatics. 2008 Mar 26;9 Suppl 2(Suppl 2):S2. doi: 10.1186/1471-2105-9-S2-S2. BMC Bioinformatics. 2008. PMID: 18387204 Free PMC article.

7

Structure-based function prediction: approaches and applications.

Gherardini PF, Helmer-Citterich M. Gherardini PF, et al. Brief Funct Genomic Proteomic. 2008 Jul;7(4):291-302. doi: 10.1093/bfgp/eln030. Epub 2008 Jul 3. Brief Funct Genomic Proteomic. 2008. PMID: 18599513 Review.

8

Structural motifs recurring in different folds recognize the same ligand fragments.

Ausiello G, Gherardini PF, Gatti E, Incani O, Helmer-Citterich M. Ausiello G, et al. BMC Bioinformatics. 2009 Jun 15;10:182. doi: 10.1186/1471-2105-10-182. BMC Bioinformatics. 2009. PMID: 19527512 Free PMC article.

9

Modular architecture of nucleotide-binding pockets.

Gherardini PF, Ausiello G, Russell RB, Helmer-Citterich M. Gherardini PF, et al. Nucleic Acids Res. 2010 Jun;38(11):3809-16. doi: 10.1093/nar/gkq090. Epub 2010 Feb 25. Nucleic Acids Res. 2010. PMID: 20185567 Free PMC article.

10

Superpose3D: a local structural comparison program that allows for user-defined structure representations.

Gherardini PF, Ausiello G, Helmer-Citterich M. Gherardini PF, et al. PLoS One. 2010 Aug 5;5(8):e11988. doi: 10.1371/journal.pone.0011988. PLoS One. 2010. PMID: 20700534 Free PMC article.

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