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Community-integrated omics links dominance of a microbial generalist to fine-tuned resource usage.
Muller EE, Pinel N, Laczny CC, Hoopmann MR, Narayanasamy S, Lebrun LA, Roume H, Lin J, May P, Hicks ND, Heintz-Buschart A, Wampach L, Liu CM, Price LB, Gillece JD, Guignard C, Schupp JM, Vlassis N, Baliga NS, Moritz RL, Keim PS, Wilmes P. Muller EE, et al. Among authors: lin j. Nat Commun. 2014 Nov 26;5:5603. doi: 10.1038/ncomms6603. Nat Commun. 2014. PMID: 25424998 Free PMC article.
High-throughput tetrad analysis.
Ludlow CL, Scott AC, Cromie GA, Jeffery EW, Sirr A, May P, Lin J, Gilbert TL, Hays M, Dudley AM. Ludlow CL, et al. Among authors: lin j. Nat Methods. 2013 Jul;10(7):671-5. doi: 10.1038/nmeth.2479. Epub 2013 May 12. Nat Methods. 2013. PMID: 23666411 Free PMC article.
POMO--Plotting Omics analysis results for Multiple Organisms.
Lin J, Kreisberg R, Kallio A, Dudley AM, Nykter M, Shmulevich I, May P, Autio R. Lin J, et al. BMC Genomics. 2013 Dec 24;14:918. doi: 10.1186/1471-2164-14-918. BMC Genomics. 2013. PMID: 24365393 Free PMC article.
Systems genomics evaluation of the SH-SY5Y neuroblastoma cell line as a model for Parkinson's disease.
Krishna A, Biryukov M, Trefois C, Antony PM, Hussong R, Lin J, Heinäniemi M, Glusman G, Köglsberger S, Boyd O, van den Berg BH, Linke D, Huang D, Wang K, Hood L, Tholey A, Schneider R, Galas DJ, Balling R, May P. Krishna A, et al. Among authors: lin j. BMC Genomics. 2014 Dec 20;15(1):1154. doi: 10.1186/1471-2164-15-1154. BMC Genomics. 2014. PMID: 25528190 Free PMC article.
Hemap: An Interactive Online Resource for Characterizing Molecular Phenotypes across Hematologic Malignancies.
Pölönen P, Mehtonen J, Lin J, Liuksiala T, Häyrynen S, Teppo S, Mäkinen A, Kumar A, Malani D, Pohjolainen V, Porkka K, Heckman CA, May P, Hautamäki V, Granberg KJ, Lohi O, Nykter M, Heinäniemi M. Pölönen P, et al. Among authors: lin j. Cancer Res. 2019 May 15;79(10):2466-2479. doi: 10.1158/0008-5472.CAN-18-2970. Epub 2019 Apr 2. Cancer Res. 2019. PMID: 30940663
Distinct transcriptomic profiles in children prior to the appearance of type 1 diabetes-linked islet autoantibodies and following enterovirus infection.
Lin J, Moradi E, Salenius K, Lehtipuro S, Häkkinen T, Laiho JE, Oikarinen S, Randelin S, Parikh HM, Krischer JP, Toppari J, Lernmark Å, Petrosino JF, Ajami NJ, She JX, Hagopian WA, Rewers MJ, Lloyd RE, Rautajoki KJ, Hyöty H, Nykter M; TEDDY Study Group. Lin J, et al. Nat Commun. 2023 Nov 22;14(1):7630. doi: 10.1038/s41467-023-42763-9. Nat Commun. 2023. PMID: 37993433 Free PMC article.
Quantitative analysis of colony morphology in yeast.
Ruusuvuori P, Lin J, Scott AC, Tan Z, Sorsa S, Kallio A, Nykter M, Yli-Harja O, Shmulevich I, Dudley AM. Ruusuvuori P, et al. Among authors: lin j. Biotechniques. 2014 Jan;56(1):18-27. doi: 10.2144/000114123. Biotechniques. 2014. PMID: 24447135 Free PMC article.
Transcriptomics profiling of human SGBS adipogenesis.
Galhardo M, Sinkkonen L, Berninger P, Lin J, Sauter T, Heinäniemi M. Galhardo M, et al. Among authors: lin j. Genom Data. 2014 Aug 7;2:246-8. doi: 10.1016/j.gdata.2014.07.004. eCollection 2014 Dec. Genom Data. 2014. PMID: 26484102 Free PMC article.
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