Knight JD - Search Results

1

A web-tool for visualizing quantitative protein-protein interaction data.

Knight JD, Liu G, Zhang JP, Pasculescu A, Choi H, Gingras AC. Knight JD, et al. Proteomics. 2015 Apr;15(8):1432-6. doi: 10.1002/pmic.201400429. Epub 2015 Jan 19. Proteomics. 2015. PMID: 25422071

2

Profiling the kinome: current capabilities and future challenges.

Knight JD, Pawson T, Gingras AC. Knight JD, et al. J Proteomics. 2013 Apr 9;81:43-55. doi: 10.1016/j.jprot.2012.10.015. Epub 2012 Oct 22. J Proteomics. 2013. PMID: 23099349 Review.

3

Proximity biotinylation and affinity purification are complementary approaches for the interactome mapping of chromatin-associated protein complexes.

Lambert JP, Tucholska M, Go C, Knight JD, Gingras AC. Lambert JP, et al. Among authors: knight jd. J Proteomics. 2015 Apr 6;118:81-94. doi: 10.1016/j.jprot.2014.09.011. Epub 2014 Oct 2. J Proteomics. 2015. PMID: 25281560 Free PMC article.

4

SAINTq: Scoring protein-protein interactions in affinity purification - mass spectrometry experiments with fragment or peptide intensity data.

Teo G, Koh H, Fermin D, Lambert JP, Knight JD, Gingras AC, Choi H. Teo G, et al. Among authors: knight jd. Proteomics. 2016 Aug;16(15-16):2238-45. doi: 10.1002/pmic.201500499. Epub 2016 May 27. Proteomics. 2016. PMID: 27119218

5

Data Independent Acquisition analysis in ProHits 4.0.

Liu G, Knight JD, Zhang JP, Tsou CC, Wang J, Lambert JP, Larsen B, Tyers M, Raught B, Bandeira N, Nesvizhskii AI, Choi H, Gingras AC. Liu G, et al. Among authors: knight jd. J Proteomics. 2016 Oct 21;149:64-68. doi: 10.1016/j.jprot.2016.04.042. Epub 2016 Apr 29. J Proteomics. 2016. PMID: 27132685 Free PMC article.

6

ProHits-viz: a suite of web tools for visualizing interaction proteomics data.

Knight JDR, Choi H, Gupta GD, Pelletier L, Raught B, Nesvizhskii AI, Gingras AC. Knight JDR, et al. Nat Methods. 2017 Jun 29;14(7):645-646. doi: 10.1038/nmeth.4330. Nat Methods. 2017. PMID: 28661499 Free PMC article. No abstract available.

7

A Dynamic Protein Interaction Landscape of the Human Centrosome-Cilium Interface.

Gupta GD, Coyaud É, Gonçalves J, Mojarad BA, Liu Y, Wu Q, Gheiratmand L, Comartin D, Tkach JM, Cheung SW, Bashkurov M, Hasegan M, Knight JD, Lin ZY, Schueler M, Hildebrandt F, Moffat J, Gingras AC, Raught B, Pelletier L. Gupta GD, et al. Among authors: knight jd. Cell. 2015 Dec 3;163(6):1484-99. doi: 10.1016/j.cell.2015.10.065. Cell. 2015. PMID: 26638075 Free PMC article.

8

Protein interaction network of the mammalian Hippo pathway reveals mechanisms of kinase-phosphatase interactions.

Couzens AL, Knight JD, Kean MJ, Teo G, Weiss A, Dunham WH, Lin ZY, Bagshaw RD, Sicheri F, Pawson T, Wrana JL, Choi H, Gingras AC. Couzens AL, et al. Among authors: knight jd. Sci Signal. 2013 Nov 19;6(302):rs15. doi: 10.1126/scisignal.2004712. Sci Signal. 2013. PMID: 24255178

9

MOB1 Mediated Phospho-recognition in the Core Mammalian Hippo Pathway.

Couzens AL, Xiong S, Knight JDR, Mao DY, Guettler S, Picaud S, Kurinov I, Filippakopoulos P, Sicheri F, Gingras AC. Couzens AL, et al. Mol Cell Proteomics. 2017 Jun;16(6):1098-1110. doi: 10.1074/mcp.M116.065490. Epub 2017 Apr 3. Mol Cell Proteomics. 2017. PMID: 28373298 Free PMC article.

10

Gene Information eXtension (GIX): effortless retrieval of gene product information on any website.

Knight JDR, Samavarchi-Tehrani P, Tyers M, Gingras AC. Knight JDR, et al. Nat Methods. 2019 Aug;16(8):665-666. doi: 10.1038/s41592-019-0477-9. Nat Methods. 2019. PMID: 31217594 Free PMC article.

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