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GenoBase: comprehensive resource database of Escherichia coli K-12.
Otsuka Y, Muto A, Takeuchi R, Okada C, Ishikawa M, Nakamura K, Yamamoto N, Dose H, Nakahigashi K, Tanishima S, Suharnan S, Nomura W, Nakayashiki T, Aref WG, Bochner BR, Conway T, Gribskov M, Kihara D, Rudd KE, Tohsato Y, Wanner BL, Mori H. Otsuka Y, et al. Among authors: yamamoto n. Nucleic Acids Res. 2015 Jan;43(Database issue):D606-17. doi: 10.1093/nar/gku1164. Epub 2014 Nov 15. Nucleic Acids Res. 2015. PMID: 25399415 Free PMC article.
Large-scale identification of protein-protein interaction of Escherichia coli K-12.
Arifuzzaman M, Maeda M, Itoh A, Nishikata K, Takita C, Saito R, Ara T, Nakahigashi K, Huang HC, Hirai A, Tsuzuki K, Nakamura S, Altaf-Ul-Amin M, Oshima T, Baba T, Yamamoto N, Kawamura T, Ioka-Nakamichi T, Kitagawa M, Tomita M, Kanaya S, Wada C, Mori H. Arifuzzaman M, et al. Among authors: yamamoto n. Genome Res. 2006 May;16(5):686-91. doi: 10.1101/gr.4527806. Epub 2006 Apr 10. Genome Res. 2006. PMID: 16606699 Free PMC article.
High-throughput, quantitative analyses of genetic interactions in E. coli.
Typas A, Nichols RJ, Siegele DA, Shales M, Collins SR, Lim B, Braberg H, Yamamoto N, Takeuchi R, Wanner BL, Mori H, Weissman JS, Krogan NJ, Gross CA. Typas A, et al. Among authors: yamamoto n. Nat Methods. 2008 Sep;5(9):781-7. doi: 10.1038/nmeth.1240. Nat Methods. 2008. PMID: 19160513 Free PMC article.
The Escherichia coli K-12 ORFeome: a resource for comparative molecular microbiology.
Rajagopala SV, Yamamoto N, Zweifel AE, Nakamichi T, Huang HK, Mendez-Rios JD, Franca-Koh J, Boorgula MP, Fujita K, Suzuki K, Hu JC, Wanner BL, Mori H, Uetz P. Rajagopala SV, et al. Among authors: yamamoto n. BMC Genomics. 2010 Aug 11;11:470. doi: 10.1186/1471-2164-11-470. BMC Genomics. 2010. PMID: 20701780 Free PMC article.
Update on the Keio collection of Escherichia coli single-gene deletion mutants.
Yamamoto N, Nakahigashi K, Nakamichi T, Yoshino M, Takai Y, Touda Y, Furubayashi A, Kinjyo S, Dose H, Hasegawa M, Datsenko KA, Nakayashiki T, Tomita M, Wanner BL, Mori H. Yamamoto N, et al. Mol Syst Biol. 2009;5:335. doi: 10.1038/msb.2009.92. Epub 2009 Dec 22. Mol Syst Biol. 2009. PMID: 20029369 Free PMC article. No abstract available.
eSGA: E. coli synthetic genetic array analysis.
Butland G, Babu M, Díaz-Mejía JJ, Bohdana F, Phanse S, Gold B, Yang W, Li J, Gagarinova AG, Pogoutse O, Mori H, Wanner BL, Lo H, Wasniewski J, Christopolous C, Ali M, Venn P, Safavi-Naini A, Sourour N, Caron S, Choi JY, Laigle L, Nazarians-Armavil A, Deshpande A, Joe S, Datsenko KA, Yamamoto N, Andrews BJ, Boone C, Ding H, Sheikh B, Moreno-Hagelseib G, Greenblatt JF, Emili A. Butland G, et al. Among authors: yamamoto n. Nat Methods. 2008 Sep;5(9):789-95. doi: 10.1038/nmeth.1239. Nat Methods. 2008. PMID: 18677321
6,248 results