Furnham N - Search Results

1

CATH: comprehensive structural and functional annotations for genome sequences.

Sillitoe I, Lewis TE, Cuff A, Das S, Ashford P, Dawson NL, Furnham N, Laskowski RA, Lee D, Lees JG, Lehtinen S, Studer RA, Thornton J, Orengo CA. Sillitoe I, et al. Among authors: furnham n. Nucleic Acids Res. 2015 Jan;43(Database issue):D376-81. doi: 10.1093/nar/gku947. Epub 2014 Oct 27. Nucleic Acids Res. 2015. PMID: 25348408 Free PMC article.

2

Extending CATH: increasing coverage of the protein structure universe and linking structure with function.

Cuff AL, Sillitoe I, Lewis T, Clegg AB, Rentzsch R, Furnham N, Pellegrini-Calace M, Jones D, Thornton J, Orengo CA. Cuff AL, et al. Among authors: furnham n. Nucleic Acids Res. 2011 Jan;39(Database issue):D420-6. doi: 10.1093/nar/gkq1001. Epub 2010 Nov 19. Nucleic Acids Res. 2011. PMID: 21097779 Free PMC article.

3

FunTree: a resource for exploring the functional evolution of structurally defined enzyme superfamilies.

Furnham N, Sillitoe I, Holliday GL, Cuff AL, Rahman SA, Laskowski RA, Orengo CA, Thornton JM. Furnham N, et al. Nucleic Acids Res. 2012 Jan;40(Database issue):D776-82. doi: 10.1093/nar/gkr852. Epub 2011 Oct 17. Nucleic Acids Res. 2012. PMID: 22006843 Free PMC article.

4

New functional families (FunFams) in CATH to improve the mapping of conserved functional sites to 3D structures.

Sillitoe I, Cuff AL, Dessailly BH, Dawson NL, Furnham N, Lee D, Lees JG, Lewis TE, Studer RA, Rentzsch R, Yeats C, Thornton JM, Orengo CA. Sillitoe I, et al. Among authors: furnham n. Nucleic Acids Res. 2013 Jan;41(Database issue):D490-8. doi: 10.1093/nar/gks1211. Epub 2012 Nov 29. Nucleic Acids Res. 2013. PMID: 23203873 Free PMC article.

5

FunTree: advances in a resource for exploring and contextualising protein function evolution.

Sillitoe I, Furnham N. Sillitoe I, et al. Among authors: furnham n. Nucleic Acids Res. 2016 Jan 4;44(D1):D317-23. doi: 10.1093/nar/gkv1274. Epub 2015 Nov 20. Nucleic Acids Res. 2016. PMID: 26590404 Free PMC article.

6

Missing in action: enzyme functional annotations in biological databases.

Furnham N, Garavelli JS, Apweiler R, Thornton JM. Furnham N, et al. Nat Chem Biol. 2009 Aug;5(8):521-5. doi: 10.1038/nchembio0809-521. Nat Chem Biol. 2009. PMID: 19620987 No abstract available.

7

Exploring the evolution of novel enzyme functions within structurally defined protein superfamilies.

Furnham N, Sillitoe I, Holliday GL, Cuff AL, Laskowski RA, Orengo CA, Thornton JM. Furnham N, et al. PLoS Comput Biol. 2012;8(3):e1002403. doi: 10.1371/journal.pcbi.1002403. Epub 2012 Mar 1. PLoS Comput Biol. 2012. PMID: 22396634 Free PMC article.

8

Current challenges in genome annotation through structural biology and bioinformatics.

Furnham N, de Beer TA, Thornton JM. Furnham N, et al. Curr Opin Struct Biol. 2012 Oct;22(5):594-601. doi: 10.1016/j.sbi.2012.07.005. Epub 2012 Aug 9. Curr Opin Struct Biol. 2012. PMID: 22884875 Review.

9

Abstracting knowledge from the Protein Data Bank.

Furnham N, Laskowski RA, Thornton JM. Furnham N, et al. Biopolymers. 2013 Mar;99(3):183-8. doi: 10.1002/bip.22107. Epub 2012 Sep 29. Biopolymers. 2013. PMID: 23023892 Review.

10

The Catalytic Site Atlas 2.0: cataloging catalytic sites and residues identified in enzymes.

Furnham N, Holliday GL, de Beer TA, Jacobsen JO, Pearson WR, Thornton JM. Furnham N, et al. Nucleic Acids Res. 2014 Jan;42(Database issue):D485-9. doi: 10.1093/nar/gkt1243. Epub 2013 Dec 6. Nucleic Acids Res. 2014. PMID: 24319146 Free PMC article.

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