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Page 1
RiboVision suite for visualization and analysis of ribosomes.
Bernier CR, Petrov AS, Waterbury CC, Jett J, Li F, Freil LE, Xiong X, Wang L, Migliozzi BL, Hershkovits E, Xue Y, Hsiao C, Bowman JC, Harvey SC, Grover MA, Wartell ZJ, Williams LD. Bernier CR, et al. Faraday Discuss. 2014;169:195-207. doi: 10.1039/c3fd00126a. Epub 2014 May 28. Faraday Discuss. 2014. PMID: 25340471
Secondary structure and domain architecture of the 23S and 5S rRNAs.
Petrov AS, Bernier CR, Hershkovits E, Xue Y, Waterbury CC, Hsiao C, Stepanov VG, Gaucher EA, Grover MA, Harvey SC, Hud NV, Wartell RM, Fox GE, Williams LD. Petrov AS, et al. Among authors: bernier cr. Nucleic Acids Res. 2013 Aug;41(15):7522-35. doi: 10.1093/nar/gkt513. Epub 2013 Jun 14. Nucleic Acids Res. 2013. PMID: 23771137 Free PMC article.
Secondary structures of rRNAs from all three domains of life.
Petrov AS, Bernier CR, Gulen B, Waterbury CC, Hershkovits E, Hsiao C, Harvey SC, Hud NV, Fox GE, Wartell RM, Williams LD. Petrov AS, et al. Among authors: bernier cr. PLoS One. 2014 Feb 5;9(2):e88222. doi: 10.1371/journal.pone.0088222. eCollection 2014. PLoS One. 2014. PMID: 24505437 Free PMC article.
Evolution of the ribosome at atomic resolution.
Petrov AS, Bernier CR, Hsiao C, Norris AM, Kovacs NA, Waterbury CC, Stepanov VG, Harvey SC, Fox GE, Wartell RM, Hud NV, Williams LD. Petrov AS, et al. Among authors: bernier cr. Proc Natl Acad Sci U S A. 2014 Jul 15;111(28):10251-6. doi: 10.1073/pnas.1407205111. Epub 2014 Jun 30. Proc Natl Acad Sci U S A. 2014. PMID: 24982194 Free PMC article.
RNA folding and catalysis mediated by iron (II).
Athavale SS, Petrov AS, Hsiao C, Watkins D, Prickett CD, Gossett JJ, Lie L, Bowman JC, O'Neill E, Bernier CR, Hud NV, Wartell RM, Harvey SC, Williams LD. Athavale SS, et al. Among authors: bernier cr. PLoS One. 2012;7(5):e38024. doi: 10.1371/journal.pone.0038024. Epub 2012 May 31. PLoS One. 2012. PMID: 22701543 Free PMC article.
RNA-magnesium-protein interactions in large ribosomal subunit.
Petrov AS, Bernier CR, Hsiao C, Okafor CD, Tannenbaum E, Stern J, Gaucher E, Schneider D, Hud NV, Harvey SC, Williams LD. Petrov AS, et al. Among authors: bernier cr. J Phys Chem B. 2012 Jul 19;116(28):8113-20. doi: 10.1021/jp304723w. Epub 2012 Jul 11. J Phys Chem B. 2012. PMID: 22712611
History of the ribosome and the origin of translation.
Petrov AS, Gulen B, Norris AM, Kovacs NA, Bernier CR, Lanier KA, Fox GE, Harvey SC, Wartell RM, Hud NV, Williams LD. Petrov AS, et al. Among authors: bernier cr. Proc Natl Acad Sci U S A. 2015 Dec 15;112(50):15396-401. doi: 10.1073/pnas.1509761112. Epub 2015 Nov 30. Proc Natl Acad Sci U S A. 2015. PMID: 26621738 Free PMC article.
Translation: The Universal Structural Core of Life.
Bernier CR, Petrov AS, Kovacs NA, Penev PI, Williams LD. Bernier CR, et al. Mol Biol Evol. 2018 Aug 1;35(8):2065-2076. doi: 10.1093/molbev/msy101. Mol Biol Evol. 2018. PMID: 29788252 Free PMC article.
Structural Patching Fosters Divergence of Mitochondrial Ribosomes.
Petrov AS, Wood EC, Bernier CR, Norris AM, Brown A, Amunts A. Petrov AS, et al. Among authors: bernier cr. Mol Biol Evol. 2019 Feb 1;36(2):207-219. doi: 10.1093/molbev/msy221. Mol Biol Evol. 2019. PMID: 30517740 Free PMC article.
ProteoVision: web server for advanced visualization of ribosomal proteins.
Penev PI, McCann HM, Meade CD, Alvarez-Carreño C, Maddala A, Bernier CR, Chivukula VL, Ahmad M, Gulen B, Sharma A, Williams LD, Petrov AS. Penev PI, et al. Among authors: bernier cr. Nucleic Acids Res. 2021 Jul 2;49(W1):W578-W588. doi: 10.1093/nar/gkab351. Nucleic Acids Res. 2021. PMID: 33999189 Free PMC article.