Bradley P - Search Results

1

U2AF1 mutations alter splice site recognition in hematological malignancies.

Ilagan JO, Ramakrishnan A, Hayes B, Murphy ME, Zebari AS, Bradley P, Bradley RK. Ilagan JO, et al. Among authors: bradley p, bradley rk. Genome Res. 2015 Jan;25(1):14-26. doi: 10.1101/gr.181016.114. Epub 2014 Sep 29. Genome Res. 2015. PMID: 25267526 Free PMC article.

2

Extensive protein and DNA backbone sampling improves structure-based specificity prediction for C2H2 zinc fingers.

Yanover C, Bradley P. Yanover C, et al. Among authors: bradley p. Nucleic Acids Res. 2011 Jun;39(11):4564-76. doi: 10.1093/nar/gkr048. Epub 2011 Feb 22. Nucleic Acids Res. 2011. PMID: 21343182 Free PMC article.

3

TAL effectors: function, structure, engineering and applications.

Mak AN, Bradley P, Bogdanove AJ, Stoddard BL. Mak AN, et al. Among authors: bradley p. Curr Opin Struct Biol. 2013 Feb;23(1):93-9. doi: 10.1016/j.sbi.2012.11.001. Epub 2012 Dec 22. Curr Opin Struct Biol. 2013. PMID: 23265998 Free PMC article. Review.

4

Probing the role of interfacial waters in protein-DNA recognition using a hybrid implicit/explicit solvation model.

Li S, Bradley P. Li S, et al. Among authors: bradley p. Proteins. 2013 Aug;81(8):1318-29. doi: 10.1002/prot.24272. Epub 2013 Apr 22. Proteins. 2013. PMID: 23444044 Free PMC article.

5

Advances in protein structure prediction and design.

Kuhlman B, Bradley P. Kuhlman B, et al. Among authors: bradley p. Nat Rev Mol Cell Biol. 2019 Nov;20(11):681-697. doi: 10.1038/s41580-019-0163-x. Epub 2019 Aug 15. Nat Rev Mol Cell Biol. 2019. PMID: 31417196 Free PMC article. Review.

6

Large-scale characterization of peptide-MHC binding landscapes with structural simulations.

Yanover C, Bradley P. Yanover C, et al. Among authors: bradley p. Proc Natl Acad Sci U S A. 2011 Apr 26;108(17):6981-6. doi: 10.1073/pnas.1018165108. Epub 2011 Apr 8. Proc Natl Acad Sci U S A. 2011. PMID: 21478437 Free PMC article.

7

Structural modeling of TAL effector-DNA interactions.

Bradley P. Bradley P. Protein Sci. 2012 Apr;21(4):471-4. doi: 10.1002/pro.2034. Epub 2012 Feb 14. Protein Sci. 2012. PMID: 22334576 Free PMC article.

8

Structure, subunit organization and behavior of the asymmetric Type IIT restriction endonuclease BbvCI.

Shen BW, Doyle L, Bradley P, Heiter DF, Lunnen KD, Wilson GG, Stoddard BL. Shen BW, et al. Among authors: bradley p. Nucleic Acids Res. 2019 Jan 10;47(1):450-467. doi: 10.1093/nar/gky1059. Nucleic Acids Res. 2019. PMID: 30395313 Free PMC article.

9

Improved beta-protein structure prediction by multilevel optimization of nonlocal strand pairings and local backbone conformation.

Bradley P, Baker D. Bradley P, et al. Proteins. 2006 Dec 1;65(4):922-9. doi: 10.1002/prot.21133. Proteins. 2006. PMID: 17034045

10

Atomistic modeling of protein-DNA interaction specificity: progress and applications.

Liu LA, Bradley P. Liu LA, et al. Among authors: bradley p. Curr Opin Struct Biol. 2012 Aug;22(4):397-405. doi: 10.1016/j.sbi.2012.06.002. Epub 2012 Jul 13. Curr Opin Struct Biol. 2012. PMID: 22796087 Free PMC article. Review.

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