Bulyk ML - Search Results

1

The NF-κB genomic landscape in lymphoblastoid B cells.

Zhao B, Barrera LA, Ersing I, Willox B, Schmidt SC, Greenfeld H, Zhou H, Mollo SB, Shi TT, Takasaki K, Jiang S, Cahir-McFarland E, Kellis M, Bulyk ML, Kieff E, Gewurz BE. Zhao B, et al. Among authors: bulyk ml. Cell Rep. 2014 Sep 11;8(5):1595-606. doi: 10.1016/j.celrep.2014.07.037. Epub 2014 Aug 21. Cell Rep. 2014. PMID: 25159142 Free PMC article.

2

Variation in homeodomain DNA binding revealed by high-resolution analysis of sequence preferences.

Berger MF, Badis G, Gehrke AR, Talukder S, Philippakis AA, Peña-Castillo L, Alleyne TM, Mnaimneh S, Botvinnik OB, Chan ET, Khalid F, Zhang W, Newburger D, Jaeger SA, Morris QD, Bulyk ML, Hughes TR. Berger MF, et al. Among authors: bulyk ml. Cell. 2008 Jun 27;133(7):1266-76. doi: 10.1016/j.cell.2008.05.024. Cell. 2008. PMID: 18585359 Free PMC article.

3

A multiparameter network reveals extensive divergence between C. elegans bHLH transcription factors.

Grove CA, De Masi F, Barrasa MI, Newburger DE, Alkema MJ, Bulyk ML, Walhout AJ. Grove CA, et al. Among authors: bulyk ml. Cell. 2009 Jul 23;138(2):314-27. doi: 10.1016/j.cell.2009.04.058. Cell. 2009. PMID: 19632181 Free PMC article.

4

STAT3 activation of miR-21 and miR-181b-1 via PTEN and CYLD are part of the epigenetic switch linking inflammation to cancer.

Iliopoulos D, Jaeger SA, Hirsch HA, Bulyk ML, Struhl K. Iliopoulos D, et al. Among authors: bulyk ml. Mol Cell. 2010 Aug 27;39(4):493-506. doi: 10.1016/j.molcel.2010.07.023. Mol Cell. 2010. PMID: 20797623 Free PMC article.

5

Principles of dimer-specific gene regulation revealed by a comprehensive characterization of NF-κB family DNA binding.

Siggers T, Chang AB, Teixeira A, Wong D, Williams KJ, Ahmed B, Ragoussis J, Udalova IA, Smale ST, Bulyk ML. Siggers T, et al. Among authors: bulyk ml. Nat Immunol. 2011 Nov 20;13(1):95-102. doi: 10.1038/ni.2151. Nat Immunol. 2011. PMID: 22101729 Free PMC article.

6

Genomic regions flanking E-box binding sites influence DNA binding specificity of bHLH transcription factors through DNA shape.

Gordân R, Shen N, Dror I, Zhou T, Horton J, Rohs R, Bulyk ML. Gordân R, et al. Among authors: bulyk ml. Cell Rep. 2013 Apr 25;3(4):1093-104. doi: 10.1016/j.celrep.2013.03.014. Epub 2013 Apr 4. Cell Rep. 2013. PMID: 23562153 Free PMC article.

7

Highly parallel assays of tissue-specific enhancers in whole Drosophila embryos.

Gisselbrecht SS, Barrera LA, Porsch M, Aboukhalil A, Estep PW 3rd, Vedenko A, Palagi A, Kim Y, Zhu X, Busser BW, Gamble CE, Iagovitina A, Singhania A, Michelson AM, Bulyk ML. Gisselbrecht SS, et al. Among authors: bulyk ml. Nat Methods. 2013 Aug;10(8):774-80. doi: 10.1038/nmeth.2558. Epub 2013 Jul 14. Nat Methods. 2013. PMID: 23852450 Free PMC article.

8

Diversification of transcription factor paralogs via noncanonical modularity in C2H2 zinc finger DNA binding.

Siggers T, Reddy J, Barron B, Bulyk ML. Siggers T, et al. Among authors: bulyk ml. Mol Cell. 2014 Aug 21;55(4):640-8. doi: 10.1016/j.molcel.2014.06.019. Epub 2014 Jul 17. Mol Cell. 2014. PMID: 25042805 Free PMC article.

9

UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions.

Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. Hume MA, et al. Among authors: bulyk ml. Nucleic Acids Res. 2015 Jan;43(Database issue):D117-22. doi: 10.1093/nar/gku1045. Epub 2014 Nov 5. Nucleic Acids Res. 2015. PMID: 25378322 Free PMC article.

10

Context influences on TALE-DNA binding revealed by quantitative profiling.

Rogers JM, Barrera LA, Reyon D, Sander JD, Kellis M, Joung JK, Bulyk ML. Rogers JM, et al. Among authors: bulyk ml. Nat Commun. 2015 Jun 11;6:7440. doi: 10.1038/ncomms8440. Nat Commun. 2015. PMID: 26067805 Free PMC article.

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