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Acceleration of short and long DNA read mapping without loss of accuracy using suffix array.
Bioinformatics. 2014 Dec 1;30(23):3396-8. doi: 10.1093/bioinformatics/btu553. Epub 2014 Aug 20.
Bioinformatics. 2014.
PMID: 25143289
Free PMC article.
Highly sensitive and ultrafast read mapping for RNA-seq analysis.
Medina I, Tárraga J, Martínez H, Barrachina S, Castillo MI, Paschall J, Salavert-Torres J, Blanquer-Espert I, Hernández-García V, Quintana-Ortí ES, Dopazo J.
Medina I, et al. Among authors: salavert torres j.
DNA Res. 2016 Apr;23(2):93-100. doi: 10.1093/dnares/dsv039. Epub 2016 Jan 5.
DNA Res. 2016.
PMID: 26740642
Free PMC article.
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Using GPUs for the exact alignment of short-read genetic sequences by means of the Burrows-Wheeler transform.
Salavert Torres J, Blanquer Espert I, Domínguez AT, Hernández García V, Medina Castelló I, Tárraga Giménez J, Dopazo Blázquez J.
Salavert Torres J, et al.
IEEE/ACM Trans Comput Biol Bioinform. 2012 Jul-Aug;9(4):1245-56. doi: 10.1109/TCBB.2012.49.
IEEE/ACM Trans Comput Biol Bioinform. 2012.
PMID: 22450827
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Web-based volume slicer for 3D electron-microscopy data from EMDB.
Salavert-Torres J, Iudin A, Lagerstedt I, Sanz-García E, Kleywegt GJ, Patwardhan A.
Salavert-Torres J, et al.
J Struct Biol. 2016 May;194(2):164-70. doi: 10.1016/j.jsb.2016.02.012. Epub 2016 Feb 10.
J Struct Biol. 2016.
PMID: 26876163
Free PMC article.
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PDBe: improved accessibility of macromolecular structure data from PDB and EMDB.
Velankar S, van Ginkel G, Alhroub Y, Battle GM, Berrisford JM, Conroy MJ, Dana JM, Gore SP, Gutmanas A, Haslam P, Hendrickx PM, Lagerstedt I, Mir S, Fernandez Montecelo MA, Mukhopadhyay A, Oldfield TJ, Patwardhan A, Sanz-García E, Sen S, Slowley RA, Wainwright ME, Deshpande MS, Iudin A, Sahni G, Salavert Torres J, Hirshberg M, Mak L, Nadzirin N, Armstrong DR, Clark AR, Smart OS, Korir PK, Kleywegt GJ.
Velankar S, et al. Among authors: salavert torres j.
Nucleic Acids Res. 2016 Jan 4;44(D1):D385-95. doi: 10.1093/nar/gkv1047. Epub 2015 Oct 17.
Nucleic Acids Res. 2016.
PMID: 26476444
Free PMC article.
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EMPIAR: a public archive for raw electron microscopy image data.
Iudin A, Korir PK, Salavert-Torres J, Kleywegt GJ, Patwardhan A.
Iudin A, et al. Among authors: salavert torres j.
Nat Methods. 2016 May;13(5):387-8. doi: 10.1038/nmeth.3806. Epub 2016 Mar 21.
Nat Methods. 2016.
PMID: 27067018
No abstract available.
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