Breit T - Search Results

1

Exploring genetic variation in the tomato (Solanum section Lycopersicon) clade by whole-genome sequencing.

100 Tomato Genome Sequencing Consortium; Aflitos S, Schijlen E, de Jong H, de Ridder D, Smit S, Finkers R, Wang J, Zhang G, Li N, Mao L, Bakker F, Dirks R, Breit T, Gravendeel B, Huits H, Struss D, Swanson-Wagner R, van Leeuwen H, van Ham RC, Fito L, Guignier L, Sevilla M, Ellul P, Ganko E, Kapur A, Reclus E, de Geus B, van de Geest H, Te Lintel Hekkert B, van Haarst J, Smits L, Koops A, Sanchez-Perez G, van Heusden AW, Visser R, Quan Z, Min J, Liao L, Wang X, Wang G, Yue Z, Yang X, Xu N, Schranz E, Smets E, Vos R, Rauwerda J, Ursem R, Schuit C, Kerns M, van den Berg J, Vriezen W, Janssen A, Datema E, Jahrman T, Moquet F, Bonnet J, Peters S. 100 Tomato Genome Sequencing Consortium, et al. Among authors: breit t. Plant J. 2014 Oct;80(1):136-48. doi: 10.1111/tpj.12616. Epub 2014 Sep 3. Plant J. 2014. PMID: 25039268 Free article.

2

WRKY40 and WRKY6 act downstream of the green leaf volatile E-2-hexenal in Arabidopsis.

Mirabella R, Rauwerda H, Allmann S, Scala A, Spyropoulou EA, de Vries M, Boersma MR, Breit TM, Haring MA, Schuurink RC. Mirabella R, et al. Plant J. 2015 Sep;83(6):1082-96. doi: 10.1111/tpj.12953. Plant J. 2015. PMID: 26243404 Free article.

3

Transcriptome dynamics in early zebrafish embryogenesis determined by high-resolution time course analysis of 180 successive, individual zebrafish embryos.

Rauwerda H, Pagano JF, de Leeuw WC, Ensink W, Nehrdich U, de Jong M, Jonker M, Spaink HP, Breit TM. Rauwerda H, et al. Among authors: breit tm. BMC Genomics. 2017 Apr 11;18(1):287. doi: 10.1186/s12864-017-3672-z. BMC Genomics. 2017. PMID: 28399811 Free PMC article.

4

A range finding protocol to support design for transcriptomics experimentation: examples of in-vitro and in-vivo murine UV exposure.

Bruning O, Rodenburg W, van Oostrom CT, Jonker MJ, de Jong M, Dekker RJ, Rauwerda H, Ensink WA, de Vries A, Breit TM. Bruning O, et al. Among authors: breit tm. PLoS One. 2014 May 13;9(5):e97089. doi: 10.1371/journal.pone.0097089. eCollection 2014. PLoS One. 2014. PMID: 24823911 Free PMC article.

5

Valuable lessons-learned in transcriptomics experimentation.

Bruning O, Rauwerda H, Dekker RJ, de Leeuw WC, Wackers PF, Ensink WA, Jonker MJ, Breit TM. Bruning O, et al. Transcription. 2015;6(3):51-5. doi: 10.1080/21541264.2015.1064195. Transcription. 2015. PMID: 26098945 Free PMC article. Review.

6

Confounding Factors in the Transcriptome Analysis of an In-Vivo Exposure Experiment.

Bruning O, Rodenburg W, Wackers PF, van Oostrom C, Jonker MJ, Dekker RJ, Rauwerda H, Ensink WA, de Vries A, Breit TM. Bruning O, et al. PLoS One. 2016 Jan 20;11(1):e0145252. doi: 10.1371/journal.pone.0145252. eCollection 2016. PLoS One. 2016. PMID: 26789003 Free PMC article.

7

Potential new antiepileptogenic targets indicated by microarray analysis in a rat model for temporal lobe epilepsy.

Gorter JA, van Vliet EA, Aronica E, Breit T, Rauwerda H, Lopes da Silva FH, Wadman WJ. Gorter JA, et al. Among authors: breit t. J Neurosci. 2006 Oct 25;26(43):11083-110. doi: 10.1523/JNEUROSCI.2766-06.2006. J Neurosci. 2006. PMID: 17065450 Free PMC article.

8

SigWinR; the SigWin-detector updated and ported to R.

de Leeuw WC, Rauwerda H, Inda MA, Bruning O, Breit TM. de Leeuw WC, et al. BMC Res Notes. 2009 Oct 6;2:205. doi: 10.1186/1756-0500-2-205. BMC Res Notes. 2009. PMID: 19807919 Free PMC article.

9

Integrating heterogeneous sequence information for transcriptome-wide microarray design; a Zebrafish example.

Rauwerda H, de Jong M, de Leeuw WC, Spaink HP, Breit TM. Rauwerda H, et al. BMC Res Notes. 2010 Jul 13;3:192. doi: 10.1186/1756-0500-3-192. BMC Res Notes. 2010. PMID: 20626891 Free PMC article.

10

The absence of Ser389 phosphorylation in p53 affects the basal gene expression level of many p53-dependent genes and alters the biphasic response to UV exposure in mouse embryonic fibroblasts.

Bruins W, Bruning O, Jonker MJ, Zwart E, van der Hoeven TV, Pennings JL, Rauwerda H, de Vries A, Breit TM. Bruins W, et al. Mol Cell Biol. 2008 Mar;28(6):1974-87. doi: 10.1128/MCB.01610-07. Epub 2008 Jan 14. Mol Cell Biol. 2008. PMID: 18195040 Free PMC article.

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