Corcoran DL - Search Results

1

Paired-end analysis of transcription start sites in Arabidopsis reveals plant-specific promoter signatures.

Morton T, Petricka J, Corcoran DL, Li S, Winter CM, Carda A, Benfey PN, Ohler U, Megraw M. Morton T, et al. Among authors: corcoran dl. Plant Cell. 2014 Jul;26(7):2746-60. doi: 10.1105/tpc.114.125617. Epub 2014 Jul 17. Plant Cell. 2014. PMID: 25035402 Free PMC article.

2

High-resolution experimental and computational profiling of tissue-specific known and novel miRNAs in Arabidopsis.

Breakfield NW, Corcoran DL, Petricka JJ, Shen J, Sae-Seaw J, Rubio-Somoza I, Weigel D, Ohler U, Benfey PN. Breakfield NW, et al. Among authors: corcoran dl. Genome Res. 2012 Jan;22(1):163-76. doi: 10.1101/gr.123547.111. Epub 2011 Sep 22. Genome Res. 2012. PMID: 21940835 Free PMC article.

3

A paired-end sequencing strategy to map the complex landscape of transcription initiation.

Ni T, Corcoran DL, Rach EA, Song S, Spana EP, Gao Y, Ohler U, Zhu J. Ni T, et al. Among authors: corcoran dl. Nat Methods. 2010 Jul;7(7):521-7. doi: 10.1038/nmeth.1464. Epub 2010 May 23. Nat Methods. 2010. PMID: 20495556 Free PMC article.

4

Transcription initiation patterns indicate divergent strategies for gene regulation at the chromatin level.

Rach EA, Winter DR, Benjamin AM, Corcoran DL, Ni T, Zhu J, Ohler U. Rach EA, et al. Among authors: corcoran dl. PLoS Genet. 2011 Jan 13;7(1):e1001274. doi: 10.1371/journal.pgen.1001274. PLoS Genet. 2011. PMID: 21249180 Free PMC article.

5

Human promoters are intrinsically directional.

Duttke SHC, Lacadie SA, Ibrahim MM, Glass CK, Corcoran DL, Benner C, Heinz S, Kadonaga JT, Ohler U. Duttke SHC, et al. Among authors: corcoran dl. Mol Cell. 2015 Feb 19;57(4):674-684. doi: 10.1016/j.molcel.2014.12.029. Epub 2015 Jan 29. Mol Cell. 2015. PMID: 25639469 Free PMC article.

6

Perspectives on Unidirectional versus Divergent Transcription.

Duttke SH, Lacadie SA, Ibrahim MM, Glass CK, Corcoran DL, Benner C, Heinz S, Kadonaga JT, Ohler U. Duttke SH, et al. Among authors: corcoran dl. Mol Cell. 2015 Nov 5;60(3):348-9. doi: 10.1016/j.molcel.2015.10.014. Mol Cell. 2015. PMID: 26545075 Free PMC article. No abstract available.

7

Integrative regulatory mapping indicates that the RNA-binding protein HuR couples pre-mRNA processing and mRNA stability.

Mukherjee N, Corcoran DL, Nusbaum JD, Reid DW, Georgiev S, Hafner M, Ascano M Jr, Tuschl T, Ohler U, Keene JD. Mukherjee N, et al. Among authors: corcoran dl. Mol Cell. 2011 Aug 5;43(3):327-39. doi: 10.1016/j.molcel.2011.06.007. Epub 2011 Jun 30. Mol Cell. 2011. PMID: 21723170 Free PMC article.

8

MicroRNA target site identification by integrating sequence and binding information.

Majoros WH, Lekprasert P, Mukherjee N, Skalsky RL, Corcoran DL, Cullen BR, Ohler U. Majoros WH, et al. Among authors: corcoran dl. Nat Methods. 2013 Jul;10(7):630-3. doi: 10.1038/nmeth.2489. Epub 2013 May 26. Nat Methods. 2013. PMID: 23708386 Free PMC article.

9

PARalyzer: definition of RNA binding sites from PAR-CLIP short-read sequence data.

Corcoran DL, Georgiev S, Mukherjee N, Gottwein E, Skalsky RL, Keene JD, Ohler U. Corcoran DL, et al. Genome Biol. 2011 Aug 18;12(8):R79. doi: 10.1186/gb-2011-12-8-r79. Genome Biol. 2011. PMID: 21851591 Free PMC article.

10

The TCT motif, a key component of an RNA polymerase II transcription system for the translational machinery.

Parry TJ, Theisen JW, Hsu JY, Wang YL, Corcoran DL, Eustice M, Ohler U, Kadonaga JT. Parry TJ, et al. Among authors: corcoran dl. Genes Dev. 2010 Sep 15;24(18):2013-8. doi: 10.1101/gad.1951110. Epub 2010 Aug 27. Genes Dev. 2010. PMID: 20801935 Free PMC article.

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