Chen ZX - Search Results

1

Comparative validation of the D. melanogaster modENCODE transcriptome annotation.

Chen ZX, Sturgill D, Qu J, Jiang H, Park S, Boley N, Suzuki AM, Fletcher AR, Plachetzki DC, FitzGerald PC, Artieri CG, Atallah J, Barmina O, Brown JB, Blankenburg KP, Clough E, Dasgupta A, Gubbala S, Han Y, Jayaseelan JC, Kalra D, Kim YA, Kovar CL, Lee SL, Li M, Malley JD, Malone JH, Mathew T, Mattiuzzo NR, Munidasa M, Muzny DM, Ongeri F, Perales L, Przytycka TM, Pu LL, Robinson G, Thornton RL, Saada N, Scherer SE, Smith HE, Vinson C, Warner CB, Worley KC, Wu YQ, Zou X, Cherbas P, Kellis M, Eisen MB, Piano F, Kionte K, Fitch DH, Sternberg PW, Cutter AD, Duff MO, Hoskins RA, Graveley BR, Gibbs RA, Bickel PJ, Kopp A, Carninci P, Celniker SE, Oliver B, Richards S. Chen ZX, et al. Genome Res. 2014 Jul;24(7):1209-23. doi: 10.1101/gr.159384.113. Genome Res. 2014. PMID: 24985915 Free PMC article.

2

Transcriptional effects of gene dose reduction.

Chen ZX, Golovnina K, Sultana H, Kumar S, Oliver B. Chen ZX, et al. Biol Sex Differ. 2014 Mar 3;5(1):5. doi: 10.1186/2042-6410-5-5. Biol Sex Differ. 2014. PMID: 24581086 Free PMC article.

3

Sex- and tissue-specific functions of Drosophila doublesex transcription factor target genes.

Clough E, Jimenez E, Kim YA, Whitworth C, Neville MC, Hempel LU, Pavlou HJ, Chen ZX, Sturgill D, Dale RK, Smith HE, Przytycka TM, Goodwin SF, Van Doren M, Oliver B. Clough E, et al. Among authors: chen zx. Dev Cell. 2014 Dec 22;31(6):761-73. doi: 10.1016/j.devcel.2014.11.021. Dev Cell. 2014. PMID: 25535918 Free PMC article.

4

X Chromosome and Autosome Dosage Responses in Drosophila melanogaster Heads.

Chen ZX, Oliver B. Chen ZX, et al. G3 (Bethesda). 2015 Apr 7;5(6):1057-63. doi: 10.1534/g3.115.017632. G3 (Bethesda). 2015. PMID: 25850426 Free PMC article.

5

Comparison of normalization and differential expression analyses using RNA-Seq data from 726 individual Drosophila melanogaster.

Lin Y, Golovnina K, Chen ZX, Lee HN, Negron YL, Sultana H, Oliver B, Harbison ST. Lin Y, et al. Among authors: chen zx. BMC Genomics. 2016 Jan 5;17:28. doi: 10.1186/s12864-015-2353-z. BMC Genomics. 2016. PMID: 26732976 Free PMC article.

6

Microenvironmental Gene Expression Plasticity Among Individual Drosophila melanogaster.

Lin Y, Chen ZX, Oliver B, Harbison ST. Lin Y, et al. Among authors: chen zx. G3 (Bethesda). 2016 Dec 7;6(12):4197-4210. doi: 10.1534/g3.116.035444. G3 (Bethesda). 2016. PMID: 27770026 Free PMC article.

7

Expressed Structurally Stable Inverted Duplicates in Mammalian Genomes as Functional Noncoding Elements.

Chen ZX, Oliver B, Zhang YE, Gao G, Long M. Chen ZX, et al. Genome Biol Evol. 2017 Apr 1;9(4):981-992. doi: 10.1093/gbe/evx054. Genome Biol Evol. 2017. PMID: 28338961 Free PMC article.

8

Integrating massive RNA-seq data to elucidate transcriptome dynamics in Drosophila melanogaster.

Hu Qian S, Shi MW, Wang DY, Fear JM, Chen L, Tu YX, Liu HS, Zhang Y, Zhang SJ, Yu SS, Oliver B, Chen ZX. Hu Qian S, et al. Among authors: chen l, chen zx. Brief Bioinform. 2023 Jul 20;24(4):bbad177. doi: 10.1093/bib/bbad177. Brief Bioinform. 2023. PMID: 37232385 Free PMC article.

9

Evolution and function of developmentally dynamic pseudogenes in mammals.

Qian SH, Chen L, Xiong YL, Chen ZX. Qian SH, et al. Among authors: chen l, chen zx. Genome Biol. 2022 Nov 8;23(1):235. doi: 10.1186/s13059-022-02802-y. Genome Biol. 2022. PMID: 36348461 Free PMC article.

10

Deficiency of X-linked inverted duplicates with male-biased expression and the underlying evolutionary mechanisms in the Drosophila genome.

Chen ZX, Zhang YE, Vibranovski M, Luo J, Gao G, Long M. Chen ZX, et al. Mol Biol Evol. 2011 Oct;28(10):2823-32. doi: 10.1093/molbev/msr101. Epub 2011 May 5. Mol Biol Evol. 2011. PMID: 21546357 Free PMC article.

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