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Methane yield phenotypes linked to differential gene expression in the sheep rumen microbiome.
Shi W, Moon CD, Leahy SC, Kang D, Froula J, Kittelmann S, Fan C, Deutsch S, Gagic D, Seedorf H, Kelly WJ, Atua R, Sang C, Soni P, Li D, Pinares-Patiño CS, McEwan JC, Janssen PH, Chen F, Visel A, Wang Z, Attwood GT, Rubin EM. Shi W, et al. Among authors: rubin em. Genome Res. 2014 Sep;24(9):1517-25. doi: 10.1101/gr.168245.113. Epub 2014 Jun 6. Genome Res. 2014. PMID: 24907284 Free PMC article.
Cultivation and sequencing of rumen microbiome members from the Hungate1000 Collection.
Seshadri R, Leahy SC, Attwood GT, Teh KH, Lambie SC, Cookson AL, Eloe-Fadrosh EA, Pavlopoulos GA, Hadjithomas M, Varghese NJ, Paez-Espino D; Hungate1000 project collaborators; Perry R, Henderson G, Creevey CJ, Terrapon N, Lapebie P, Drula E, Lombard V, Rubin E, Kyrpides NC, Henrissat B, Woyke T, Ivanova NN, Kelly WJ. Seshadri R, et al. Nat Biotechnol. 2018 Apr;36(4):359-367. doi: 10.1038/nbt.4110. Epub 2018 Mar 19. Nat Biotechnol. 2018. PMID: 29553575 Free PMC article.
Metagenomic discovery of biomass-degrading genes and genomes from cow rumen.
Hess M, Sczyrba A, Egan R, Kim TW, Chokhawala H, Schroth G, Luo S, Clark DS, Chen F, Zhang T, Mackie RI, Pennacchio LA, Tringe SG, Visel A, Woyke T, Wang Z, Rubin EM. Hess M, et al. Among authors: rubin em. Science. 2011 Jan 28;331(6016):463-7. doi: 10.1126/science.1200387. Science. 2011. PMID: 21273488
Genomic views of distant-acting enhancers.
Visel A, Rubin EM, Pennacchio LA. Visel A, et al. Among authors: rubin em. Nature. 2009 Sep 10;461(7261):199-205. doi: 10.1038/nature08451. Nature. 2009. PMID: 19741700 Free PMC article. Review.
Tissue-specific SMARCA4 binding at active and repressed regulatory elements during embryogenesis.
Attanasio C, Nord AS, Zhu Y, Blow MJ, Biddie SC, Mendenhall EM, Dixon J, Wright C, Hosseini R, Akiyama JA, Holt A, Plajzer-Frick I, Shoukry M, Afzal V, Ren B, Bernstein BE, Rubin EM, Visel A, Pennacchio LA. Attanasio C, et al. Among authors: rubin em. Genome Res. 2014 Jun;24(6):920-9. doi: 10.1101/gr.168930.113. Epub 2014 Apr 21. Genome Res. 2014. PMID: 24752179 Free PMC article.
The Epigenomic Landscape of Prokaryotes.
Blow MJ, Clark TA, Daum CG, Deutschbauer AM, Fomenkov A, Fries R, Froula J, Kang DD, Malmstrom RR, Morgan RD, Posfai J, Singh K, Visel A, Wetmore K, Zhao Z, Rubin EM, Korlach J, Pennacchio LA, Roberts RJ. Blow MJ, et al. Among authors: rubin em. PLoS Genet. 2016 Feb 12;12(2):e1005854. doi: 10.1371/journal.pgen.1005854. eCollection 2016 Feb. PLoS Genet. 2016. PMID: 26870957 Free PMC article.
Deletion of ultraconserved elements yields viable mice.
Ahituv N, Zhu Y, Visel A, Holt A, Afzal V, Pennacchio LA, Rubin EM. Ahituv N, et al. Among authors: rubin em. PLoS Biol. 2007 Sep;5(9):e234. doi: 10.1371/journal.pbio.0050234. PLoS Biol. 2007. PMID: 17803355 Free PMC article.
257 results