Li D - Search Results

1

Methane yield phenotypes linked to differential gene expression in the sheep rumen microbiome.

Shi W, Moon CD, Leahy SC, Kang D, Froula J, Kittelmann S, Fan C, Deutsch S, Gagic D, Seedorf H, Kelly WJ, Atua R, Sang C, Soni P, Li D, Pinares-Patiño CS, McEwan JC, Janssen PH, Chen F, Visel A, Wang Z, Attwood GT, Rubin EM. Shi W, et al. Among authors: li d. Genome Res. 2014 Sep;24(9):1517-25. doi: 10.1101/gr.168245.113. Epub 2014 Jun 6. Genome Res. 2014. PMID: 24907284 Free PMC article.

2

Production of indolic compounds by rumen bacteria isolated from grazing ruminants.

Attwood G, Li D, Pacheco D, Tavendale M. Attwood G, et al. Among authors: li d. J Appl Microbiol. 2006 Jun;100(6):1261-71. doi: 10.1111/j.1365-2672.2006.02896.x. J Appl Microbiol. 2006. PMID: 16696673 Free article.

3

Reclassification of Clostridium proteoclasticum as Butyrivibrio proteoclasticus comb. nov., a butyrate-producing ruminal bacterium.

Moon CD, Pacheco DM, Kelly WJ, Leahy SC, Li D, Kopecny J, Attwood GT. Moon CD, et al. Among authors: li d. Int J Syst Evol Microbiol. 2008 Sep;58(Pt 9):2041-5. doi: 10.1099/ijs.0.65845-0. Int J Syst Evol Microbiol. 2008. PMID: 18768601

4

The genome sequence of the rumen methanogen Methanobrevibacter ruminantium reveals new possibilities for controlling ruminant methane emissions.

Leahy SC, Kelly WJ, Altermann E, Ronimus RS, Yeoman CJ, Pacheco DM, Li D, Kong Z, McTavish S, Sang C, Lambie SC, Janssen PH, Dey D, Attwood GT. Leahy SC, et al. Among authors: li d. PLoS One. 2010 Jan 28;5(1):e8926. doi: 10.1371/journal.pone.0008926. PLoS One. 2010. PMID: 20126622 Free PMC article.

5

The glycobiome of the rumen bacterium Butyrivibrio proteoclasticus B316(T) highlights adaptation to a polysaccharide-rich environment.

Kelly WJ, Leahy SC, Altermann E, Yeoman CJ, Dunne JC, Kong Z, Pacheco DM, Li D, Noel SJ, Moon CD, Cookson AL, Attwood GT. Kelly WJ, et al. Among authors: li d. PLoS One. 2010 Aug 3;5(8):e11942. doi: 10.1371/journal.pone.0011942. PLoS One. 2010. PMID: 20689770 Free PMC article.

6

Extracellular polysaccharide-degrading proteome of Butyrivibrio proteoclasticus.

Dunne JC, Li D, Kelly WJ, Leahy SC, Bond JJ, Attwood GT, Jordan TW. Dunne JC, et al. Among authors: li d. J Proteome Res. 2012 Jan 1;11(1):131-42. doi: 10.1021/pr200864j. Epub 2011 Nov 29. J Proteome Res. 2012. PMID: 22060546

7

Carbohydrate transporting membrane proteins of the rumen bacterium, Butyrivibrio proteoclasticus.

Bond JJ, Dunne JC, Kwan FY, Li D, Zhang K, Leahy SC, Kelly WJ, Attwood GT, Jordan TW. Bond JJ, et al. Among authors: li d. J Proteomics. 2012 Jun 18;75(11):3138-44. doi: 10.1016/j.jprot.2011.12.013. Epub 2011 Dec 20. J Proteomics. 2012. PMID: 22200676

8

The Complete Genome Sequence of Methanobrevibacter sp. AbM4.

Leahy SC, Kelly WJ, Li D, Li Y, Altermann E, Lambie SC, Cox F, Attwood GT. Leahy SC, et al. Among authors: li d, li y. Stand Genomic Sci. 2013 May 25;8(2):215-27. doi: 10.4056/sigs.3977691. eCollection 2013. Stand Genomic Sci. 2013. PMID: 23991254 Free PMC article.

9

Improving the genetic representation of rare taxa within complex microbial communities using DNA normalization methods.

Gagic D, Maclean PH, Li D, Attwood GT, Moon CD. Gagic D, et al. Among authors: li d. Mol Ecol Resour. 2015 May;15(3):464-76. doi: 10.1111/1755-0998.12321. Epub 2014 Sep 26. Mol Ecol Resour. 2015. PMID: 25159704

10

The complete genome sequence of the rumen methanogen Methanobacterium formicicum BRM9.

Kelly WJ, Leahy SC, Li D, Perry R, Lambie SC, Attwood GT, Altermann E. Kelly WJ, et al. Among authors: li d. Stand Genomic Sci. 2014 Dec 8;9:15. doi: 10.1186/1944-3277-9-15. eCollection 2014. Stand Genomic Sci. 2014. PMID: 25780506 Free PMC article.

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