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deepBlockAlign: a tool for aligning RNA-seq profiles of read block patterns.
Langenberger D, Pundhir S, Ekstrøm CT, Stadler PF, Hoffmann S, Gorodkin J. Langenberger D, et al. Among authors: gorodkin j. Bioinformatics. 2012 Jan 1;28(1):17-24. doi: 10.1093/bioinformatics/btr598. Epub 2011 Nov 3. Bioinformatics. 2012. PMID: 22053076 Free PMC article.
Structured RNAs and synteny regions in the pig genome.
Anthon C, Tafer H, Havgaard JH, Thomsen B, Hedegaard J, Seemann SE, Pundhir S, Kehr S, Bartschat S, Nielsen M, Nielsen RO, Fredholm M, Stadler PF, Gorodkin J. Anthon C, et al. Among authors: gorodkin j. BMC Genomics. 2014 Jun 10;15(1):459. doi: 10.1186/1471-2164-15-459. BMC Genomics. 2014. PMID: 24917120 Free PMC article.
Transcriptomic landscape of lncRNAs in inflammatory bowel disease.
Mirza AH, Berthelsen CH, Seemann SE, Pan X, Frederiksen KS, Vilien M, Gorodkin J, Pociot F. Mirza AH, et al. Among authors: gorodkin j. Genome Med. 2015 May 13;7(1):39. doi: 10.1186/s13073-015-0162-2. eCollection 2015. Genome Med. 2015. PMID: 25991924 Free PMC article.
The identification and functional annotation of RNA structures conserved in vertebrates.
Seemann SE, Mirza AH, Hansen C, Bang-Berthelsen CH, Garde C, Christensen-Dalsgaard M, Torarinsson E, Yao Z, Workman CT, Pociot F, Nielsen H, Tommerup N, Ruzzo WL, Gorodkin J. Seemann SE, et al. Among authors: gorodkin j. Genome Res. 2017 Aug;27(8):1371-1383. doi: 10.1101/gr.208652.116. Epub 2017 May 9. Genome Res. 2017. PMID: 28487280 Free PMC article.
144 results