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EnsembleGASVR: a novel ensemble method for classifying missense single nucleotide polymorphisms.
Bioinformatics. 2014 Aug 15;30(16):2324-33. doi: 10.1093/bioinformatics/btu297. Epub 2014 Apr 26.
Bioinformatics. 2014.
PMID: 24771561
Genome-scale regression analysis reveals a linear relationship for promoters and enhancers after combinatorial drug treatment.
Rapakoulia T, Gao X, Huang Y, de Hoon M, Okada-Hatakeyama M, Suzuki H, Arner E.
Rapakoulia T, et al.
Bioinformatics. 2017 Dec 1;33(23):3696-3700. doi: 10.1093/bioinformatics/btx503.
Bioinformatics. 2017.
PMID: 28961713
Free PMC article.
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Deep learning identifies and quantifies recombination hotspot determinants.
Li Y, Chen S, Rapakoulia T, Kuwahara H, Yip KY, Gao X.
Li Y, et al. Among authors: rapakoulia t.
Bioinformatics. 2022 May 13;38(10):2683-2691. doi: 10.1093/bioinformatics/btac234.
Bioinformatics. 2022.
PMID: 35561158
Free PMC article.
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CENTRE: a gradient boosting algorithm for Cell-type-specific ENhancer-Target pREdiction.
Rapakoulia T, Lopez Ruiz De Vargas S, Omgba PA, Laupert V, Ulitsky I, Vingron M.
Rapakoulia T, et al.
Bioinformatics. 2023 Nov 1;39(11):btad687. doi: 10.1093/bioinformatics/btad687.
Bioinformatics. 2023.
PMID: 37982748
Free PMC article.
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Automatic identification of small molecules that promote cell conversion and reprogramming.
Napolitano F, Rapakoulia T, Annunziata P, Hasegawa A, Cardon M, Napolitano S, Vaccaro L, Iuliano A, Wanderlingh LG, Kasukawa T, Medina DL, Cacchiarelli D, Gao X, di Bernardo D, Arner E.
Napolitano F, et al. Among authors: rapakoulia t.
Stem Cell Reports. 2021 May 11;16(5):1381-1390. doi: 10.1016/j.stemcr.2021.03.028. Epub 2021 Apr 22.
Stem Cell Reports. 2021.
PMID: 33891873
Free PMC article.
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